BtaALTA0031526-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017783 | TSPYL2
Description
TSPYL2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKJ1]
Coordinates
chrX:95957461-95959607:+
Coord C1 exon
chrX:95957461-95958276
Coord A exon
NA
Coord C2 exon
chrX:95959530-95959607
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TAAACTGCTCCCTCCATCAGTTC
3' ss Score
6.75
Exon sequences
Seq C1 exon
CAGTCGAGTCAGGGTACGGGGAGTCGCCCCCTCTCGCGGAGAGCCTAGAAACGCTCTCTCCCTCAGAGGTTTCTGGGGAAAGCCTGGAGATTGACTTCCAGGTGACGGAGCCCAGCAGCTTTGCAGGAGAGAAGGCCCTAGAAACCTGTAGCGCAGGGGGGCGGGGGTACCAGAGGTTAGCCGGTCCAAGAGGGAGAGAAGAGACCGTCATCATCGTGGAAGATGACGACGAGGATGAAAAGGAAAGCGTGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGCCCAGGAAGGTGAAGAGGGAAAGCCCAGAGAAGAATGCTGAGAAGATAGAGTGCATCCTGCAGGCTCTGGAAAACATTCAGCTAGACCTGGAGGCGGTGAATATCAAGGCTGGCAAGGCCTTCCTCCGTCTCAAGCGCAAGTTCATCCAGATGCGGAGACCCTTCCTGGAGCGCAGAGATCTTATCATCCAGAATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
NA
Seq C2 exon
TTCCTCAACCACCCCAAAATTTCAATCTTGATCAACCAACGCGATGAAGACATTTTCCGCTACTTGACCAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017783-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(29.9=20.6)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGAGCGCAGAGATCTT
R:
GCGGAAAATGTCTTCATCGCG
Band lengths:
117-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development