MmuALTA0019028-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000041096 | Tspyl2
Description
TSPY-like 2 [Source:MGI Symbol;Acc:MGI:106244]
Coordinates
chrX:148774846-148776968:-
Coord C1 exon
chrX:148776083-148776968
Coord A exon
chrX:148774907-148774923
Coord C2 exon
chrX:148774846-148774906
Length
17 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TAAACTGCTCCACTCATCAGTTC
3' ss Score
3.66
Exon sequences
Seq C1 exon
ACGCAATGGAGTCAGGGTTCGGGGAGGCCCCTTCCACAGGGATCATGGAAACGCTCCCATCTTCAGAAATCTCTGGGGGAAGCCTGGCAATTGACTTTCAGGTTGCAGAGCCCAGCAGCCTCGGAGAGAAGGCCCTAGAAACCTGTAGCTTAGGAGGGTGGGGGCCCCAGATGTTAGTTGGTCCGAAGAGGAAGGAGGAGGCTATCATAATAGTGGAAGATGAGGATGAGGATGACAAGGAGAGTGTGAGGAGGCGGCAGCGTCGGAGGAGGAGGAGAAGGAAGCAGAGGAAGGCGAAGGAGAGCCGAGAGAGGAGTGCCCAGAGGATGGAGAGCATACTGCAGGCCCTGGAGAGCATTCAAATGGACCTGGAGGCGGTGAACATCAAGGCAGGCAAGGCCTTCTTGCGTCTCAAGCGCAAATTCATCCAGATGCGAAGGCCCTTTTTGGAGCGCAGAGACCTCATCATCCAGCATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
TTCCTCAACCACCCCAG
Seq C2 exon
AATTTCAATCTTGATCAACCAACGTGACAGAGACATTTTCCGCTACTTGACCAATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041096-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(29.9=21.4)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTTGGAGCGCAGAGACCT
R:
AGCGGAAAATGTCTCTGTCACG
Band lengths:
102-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: