HsaALTA0009082-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000184205 | TSPYL2
Description
TSPY-like 2 [Source:HGNC Symbol;Acc:24358]
Coordinates
chrX:53111549-53113770:+
Coord C1 exon
chrX:53111549-53112487
Coord A exon
chrX:53113714-53113726
Coord C2 exon
chrX:53113727-53113770
Length
13 bp
Sequences
Splice sites
5' ss Seq
GCAGTATCC
5' ss Score
-5.12
3' ss Seq
TCAATCCTTGACCTAAACTGCTC
3' ss Score
-3
Exon sequences
Seq C1 exon
CGGGGTATGGGGAGGCGCCCCCGCCCACGGAGAGCCTGGAAGCACTCCCCACTCCTGAGGCCTCGGGGGGGAGCCTGGAAATCGATTTTCAGGTTGTACAGTCGAGCAGTTTTGGTGGAGAGGGGGCCCTAGAAACCTGTAGCGCAGTGGGGTGGGCGCCCCAGAGGTTAGTTGACCCGAAGAGCAAGGAAGAGGCGATCATCATAGTGGAGGATGAGGATGAGGATGAGCGGGAGAGTATGAGGAGCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAGAGGAAGGTGAAGAGGGAAAGCAGAGAGAGAAATGCCGAGAGGATGGAGAGCATCCTGCAGGCACTGGAGGATATTCAGCTGGATCTGGAGGCAGTGAACATCAAGGCAGGCAAAGCCTTCCTGCGTCTCAAGCGCAAGTTCATCCAGATGCGAAGACCCTTCCTGGAGCGCAGAGACCTCATCATCCAGCATATCCCAGGCTTCTGGGTCAAAGCA
Seq A exon
CTCCACTCATCAG
Seq C2 exon
TTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0095613=NAP=PU(29.9=20.8)
A:
NA
C2:
PF0095613=NAP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCAGATGCGAAGACCCT
R:
TGAAATTCTGGGGTGGTTGAGG
Band lengths:
101-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)