BtaINT0154236 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98422680-98425143:+
Coord C1 exon
chr11:98422680-98422764
Coord A exon
chr11:98422765-98423826
Coord C2 exon
chr11:98423827-98425143
Length
1062 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TCTGGACACATCCTTCCCAGTCA
3' ss Score
3.34
Exon sequences
Seq C1 exon
GAGAAGCTGAAGCCGGCCCCCAGCAAGGAGTCATCCTTGACCGACAGCTACATCAGCCAGACCTCCTTAGGCTCCATCTTGGGCT
Seq A exon
GTAAGTCCCCCTGCATGGGCCAATGCAGCAGGGAGGGCAAAGGTCAGGAGTCAGAGGCTCCCAGGCCTGGGTATGAATCTGGCCTCTGCTGCTTACTGCTGTATATATATGGAGCAGGAGGGCTCATCCCAGCTTTGCTGGAGGTGCGGGAGCAGGGTGGCGGGCCCAGAGAGGGGGAGTGAGGGGAACCCTCTGGGATGCCCAGCACGCAGCCTGGGCAGGAGCTCTCACTCGAAGCACTTCATCATTGCTGCCTGCTCCACCTTCATTCCCCGCTCAACCCTGTCCCTCTTCTCTCTGCCCCCTTGGCCTCTCCCTGAAATTACCCCACAGAGCCTATGCGTGTCTAGGGGGCTTTTACCCTCAGCTCCGCCAGGTGCCAACATGGAAGGGACAAAATGGAAAACCTGGGAATGCGGCTCTGAGTCCCGTGAGCAGCTGTGGGCAGTCTGGGGAGGGATGGACGTAGGGGCGTCTAGTCCCCTTCCTGCCATTCAGCAAATGTGTTGAGCGTCCAGTGGCTGAGCCTGTGCAGGACACCGGTGCACGCATGAATGGCACAGTCCTTGCCCCAGGGACATCTTGGTCCTGAAGGAAACAAGGGACACAGAGGGCTGGACAGTGCAGCCATACTGTGGAGGGGAGTCCTGAGAACTGTGGGTGCATTTAGCCCCCCTTGGAGTGGGGGGGGGGGTGTCAGGAAGGGTTTTTAGGACCCAGGGGGGAAGTGTGGGTGGAGTAGAGTACAGAGAATTGCTGCAGAGGGCCAGGTCCCTGCAGGTGCTGGTGGTAGCTGGACACAGAGGGCGAGCGGCGGCCGGCAGAGTGGAGGCCAGCGCTGGACAGTGGGGACCTCCATCTCTGCCCTTTATCTTATGGCCATGACTCACTTGTAGGCCTCAGGGTGCCAGGAAGGCTGGGCTTGGCGAGATCTGGGAGGCCTTCCCCCTTGGCCATACGAGGCCTTTGGGTCATAGGCAAAGGTGAGGCCTAGAAGCCTCCCTTTCCTGGGACTGTCTGGGGAAGGCGGCCTGACAGCTTCTCTGGACACATCCTTCCCAG
Seq C2 exon
TCAGAACCAGGTCCACCTCGGAGACGGAGACGTCCAGTACGGGTCAGGAATACAGGAGCACTTCCACCACTGTTGTGACAGTCTCTGACTCCTCACTGCTAAGGACACAGTCCTCAGACTCGGGGGACAGCAGGAAAGACCTAAGCCTGAACCACAGCCCCAGAGAAACCAAGTCCACCCCAGGCCACCACCAGAGACCCAGCAAGACGGAGGCCGCCCTCATCCACAGCCAGAGGCCCAGCAAGACGGAGGCCGCCCTCATCCACAGCCAGAGGCCCAGCAAGACGGATACAACCCAGATTCAAAGCCAGAGGCCCAGCAAGATGGACGCCACCCAGATTCGAAGCCAGAGGCCCAGCAAGACGGATACAACCCAGATTCAAAGCCAGAGGCCCAGCAAGATGGAGGCTTCCCTCATTCACAGCCAGAGGCCCAGTAAGACAGACACCACCCAGATTCAAAGCCAGAGGCCCAGCAAGACGGACGCCACCCAGATTCAAAGCCAGAGGCCCAGTAAGACAGACACCACCCAGATTCAAAGCCAGAGGCCCAGCAAGACGGATACTGCCCAGATTCAAAACCAGAGGCCCAGTAAGACAGACACCACCCAGATTCAAAGCCAGAGGCCCAGCAAGACGGACACCACCCAGATTCAAAGCCAAAGGCCCAGCAGGACGGAGGCCACCCTCATCCACAGCCAGAGGCCCAGCAGGACAGACGCCACCCAGATTCAAAACCAGAGGCCCAGCAGGACAGAGGCTGCCTGGAGCCCAAGGCAAAAGCTCAACAAGACCCAGGCCACCCAGGGCTCAAGGCGGAGGCTCAGAAAGTCCAAGGGTGCCGATGGTCAGAGCTGGAGACTCAGAAAGGCAGCTGCCACCCAGGACCAAAGCTGGAGAATGATCCAAAGTCCTAGCAAAATCAACACTTCCTATGACTCAAGTTGGAGCCCCTCCAACACTGAGGCCACCAAGGGCCAGGCTCAGAGTCAGAGGCCTAGCCAGTCCAAGGCAGCCCAGAGCGCAAGCCCAGGTTCCAGCAAGACCGAGGTCACCTGGGGACTGAACCCAAGTCTTAGCAACATGCAGACCGCCCAGGGCCCAAGACAGAAGCCCAGCCCCAGCAGTGAGGCTGCTCTCTGAAAGGGATGCTCAGCCCCTCACTTCTTACTGCAGTGCAGGGCGATTCTCCCCACTCTGCTCCGCGCTGCAGCCTCCCTCAGAAGCAATCAGAACCTGGGCCAACATCCTCTGGTCCCGTGACTAAATTTATTGTATTTGTTTTCTTCATGTACAAAATTAAAAACTTGAAAAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509:ENSBTAT00000043180:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATCAGCCAGACCTCCT
R:
GCCTCTGGCTTTGAATCTGGG
Band lengths:
354-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development