HsaINT0174076 @ hg19
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130491860-130493879:+
Coord C1 exon
chr9:130491860-130491947
Coord A exon
chr9:130491948-130492914
Coord C2 exon
chr9:130492915-130493879
Length
967 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTTTGGCACCCCCTTCCTAGTCA
3' ss Score
5.8
Exon sequences
Seq C1 exon
GAGAAAAAATCAGAGCTCATACCTAGCAAGGTGGCGTCCCTGTCTGACAGCTACCTTGACCAGACCTCTTCAGCCTCCAGCATGAGCT
Seq A exon
GTAAGTCCCTGGTGCTTCCGCCAGGCCTCAGGAAGCTAAGGCAGCAGGGTAGTCAAAGCTCAGGGGTCGAAGACCGCTGGCCTAGGTGTGCGTTCGGCCCCGCTGCTGACAGCTGGGTGGCCTGGGGCGAGTGGCTCTAGAGCGGGAGTAACACTGTTGCGGGGCTGCCCAGGACGAGGTGAGGCTTGCTCCAGGCACTTCATGGTAGCTGCTGCTCTGCTCTCATCCCCTCCTAGCCCTGTCCCTGAAATAAGCCCACAAACCTTGTGCATGGCCAGGGGGCTTTTAGCCCCAGTACATAGGGCCCTAGCCTGGAGGAGACAGAAGTGAAGAATGGGGAGGCTGCTCCTCAGAGGCCCCAAGGCGGGTGTGCGCAGTCCTCGCTCGGGAGGCGAGTGGCAGGGCCCAGGCCCCTTCTTCATTTTGTGAATCCAGCAAACTCCCCAAGTGCCCTGGGCCAGGCCTGTGCTCAATACTAGGCACAGGAATGACTGGCATAGTCCTTGCCCTGAGACATGAATTCTAAGCTCCAACAGGAAGAAGGCTCCCAGGTGACCCACAGCCAGGAGACAGGGCAGACACAGTGCGGGGGAAGCCGGGGTGTGGGTGCATTTAGCGCCTTTTAGTGGGGACGAGGATGGAAAAGCAGGAGGGTGCCAGGCGGGGGGACGCAGGGGCCCTGCTGGGGCTGTCTGCTGCAACAGGAGCACAGAGGGCAGGGGCAGCCACAGAGCAGAGGCCTGGGACTGGGAGAAGGGGGCTCCTAGGCATCTCCCCCATCTCACAGCCCCACCCCTCAGGGTCTGGGTCGCTGGGGGCTGGGCGGGGGTGATCTGCAGGTCTTTCCCTTTGGTGATGCGAAGCCTCTGGGCCACAGGCCAGTGTGAGATTGGGAAGCCCCTTTTCCCAGAGCTGTCCAGGGCAGGTGCGGCAGGCCTGATGGGTGCTTTTGGCACCCCCTTCCTAG
Seq C2 exon
TCAGGACCACAGGCACCTCAGAGACTGAGATGTCGGCTATCTGCCAGGAATACAGGAGCACCTCAGCCACCGCCGTGACATTCTCTGACTCGTCACTGTTGAAGACGCAATCCTCGGACTCTGGGAACAACAGGGAGGCACTAAGCCATGGTCCCAGAAAAATCAAGGCCACCCAGGGCCAGAGGCAGAGCCTTAGCAAGACTGAGCCCACCCAGAGCCAGAGGCGGAACTCCAGCAAGACCAAGGCCACTATACACAAGAGGAACTCCAGCAAGACCAAGGCCACCCAAAGCCAGAGGCGGAACTCCAGCAAGACCAGGGCCACCCAGGGCCAGGGGCAGAGCTCCAGCAAGACTGAGGCCACTCAGGGCCAGAGGCAGAGCTCCAGCGAGATTGAGGCCACCCAGGGCCCAAGGCAGGAGCCCAGCAAGACCAAGACCACCCGGAGCCCAAGGCAGAGGCCCAGAAAGGTCAAGGCTGCTCGTGGCCGGAGCTGGAGACCCAGCAAGGTTGATGCCACCCAGGGCCGAAGCAGGGGACTGCTCCGAAGTTCCACCAAGACTGAGGCTTTCTATGACTCAAACTGGAGCCTCAGCAAAACTGAGTATGCCCAAGGCCAGGGCCAGAGGTCCAGCAAGGCTGAGGGTGCCCAGGGCAAGAGCCAGGGCATGAGCTCAACTTCCAGCAAGGCCGAGTCCACCTGGGGACCCAGCCCAAGTCTCAGCAAAACTGAGGTTGATCAGGACCTCACCTACTATGAAGCTGTCTGAAGGGACCATCCAGACCCTCCCTTCTTGCTGGGGAGGGGACGAGTTCTACCCACCTCCCCACACTGGCACTCAGCCAGCTGCCTCCTTCCAGAGCAATTAAAAGTCTTAGCAACAGTCCTCTGGTCCCACAGCTGAGTTTATTATACTTGTTTTCTTTTACAAAATTAAAAACATCTAAAACCAGGCCCAAGTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-TTC16:NM_144965:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGTCTGACAGCTACCT
R:
CTTTGGGTGGCCTTGGTCTTG
Band lengths:
345-1312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)