BtaINT0154241 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98412758-98414909:+
Coord C1 exon
chr11:98412758-98412887
Coord A exon
chr11:98412888-98414694
Coord C2 exon
chr11:98414695-98414909
Length
1807 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CCCTGCCTTGCACCCCACAGCCC
3' ss Score
7.97
Exon sequences
Seq C1 exon
CATGGCCTGTCTCCTGGCCCTCAAAAAGCATCGTGAATGCCTCTCATTCGTCACCAAGGAGGTGAAGCAAGGCACCACCAATGCGGATGTCTACATCCTCCGGGCCAGGCTCTACAACTTCTTCCAGAAG
Seq A exon
GTAGAACAGGGCGGGCAGGGCCGATTGGTGGGCCTCCTCCCCGTTTGGGTGCTGTGATTACAGGAGGTGGCTAGGCTATCCACCAGCCCAGAGGCCACAGCCCGCAGTGTGGTGGGAGCCCTGTCCTTCCCGAACCCTGACCAGCGCTGACCACTCCTGCCCAGTCAGGTAGTTGTTCCAGCATCATTCAGCCCTGGTTCTCTGCCAGGCCTGCGCCAATCCCTGAAAACCACAAGGTGAGAAGCCTCGGCCTGCCCTGCCCTCACGGAACTCACAGGCCAGAGGAAATGGCCCCCAGCAAATAATTACACAAGAACTGACTTCCCAGTTATGTGAAGCACCATCAGAGGCCACCAGGCATCCCTTAGATGTGACTTGGGGTCATAAGGAAGGAGGGGCTGCAGGGATGAGAGAGTGATGGGCAGGATCTCGTGAACCCCAGGGCACCCTGACGTCTTCCTGGGGAGCAGCAGGAACCTCAGAAGGGTGCTTCCTGGGGCAGTGGGCCTTAGAAAAGTACTTTTGGCTACCAGGGGGCATGTGGGCTCGGGGGGCAGGGGCAGAGGGGAAAATCCGGAGACTGGAAGCCTGGGTACCATCCATCTGGATAGGAGTGGGGCTCGGGGAGGATGGGCAGGATGGTGGCAAGGATGGGGGGCAAGTTCTTCAGACCTTTGGAAGCAGGACCAGAGACTGACTTGGGGGCTGGAGAGGTGAGAGTGAGGAAAACAGAGGCGTCCAGAACAAGGCCTGTTGTTCCAGTTTGGCCAGGGTGCTGGACAGGGGGCGGGGGCAGGGGGCAGGCAGGGAGACTCAGGAAGGGGAAGAACATGATGGGCTAGAGTGGGCAGGGTGTCCTCAGGGTGCTGGAACCAAGAGCCTCCCTCTGCTGGGGGCTGGGCTCTTGTGTCCCACAGGTGACTCAGTGGGAGAGTCTCCTTCAAAGGTAGGAGACTAGTAATTATTGACAATTATCGTTGAGTGTTGGGATTGCAGCTCTCCCTACAATGCATAGACACATTCTAAGCACTTTACTCACATTTGTCTCTAAGGCTGGAAGTAACCCTCTGAGGTTAGACACAACCCACTGTCCTCTTCTCACAGATGAGGAAGCAGGTTCAGGTGGTCTGGCTAACTTGCTCCCCTTGAGCCCAAGTCCACCTGTTCCAAAACCCTGTCCCAACCTCTGCCATCTTTCCCCTCCCACCCAGTGTCCACACTGCCTCTCTCGCCCTCAACCAATTACCCCACAGGACATGGGGTGCTTGCTAAAACTGTTGATTGACTGACTGACTGACCTGCTCACCCAGTGGAAGGTGTTTGCCTAGGGATGTTTTCTGCTCATGCCCAGGCCTGAATCTGTTCTTGGTTAGAGTTGTCTTGGGCTTAAAGGTCAGAGGTGTCTGGGAGGGTGTACCGGGGAGGACAGGGAGACCATGACAGTCATGGTCAGGAGACCATGGCCTCCCCCTACCTCAAGTGAGCCTCGCAGAAGTCCTGCAAGGAGGAGGCATCTGTAGCTCCATTTTACAGAAAAAACCACTGAGGCAGACCTGGCTCACCTGAGGTCACATCTGGAAAGGGGCCAGTAGGGATGGGGCCTTGGATAGGATTTTCCCACAATGCTCCCTCCCTCCTTCAAGAGATAGAAAAGGCAAAACAGCAATGGAGGGGAGGAGGGGGCGGTGGGGCACTGAAGATGGGTGGCATGATGCTGGCCTGCCCAGAGGTCTGCCTCCCCACAGTGAACAGGGGAGAGTTCAGCTTGGGTGCAGCCCTGACGCCATCCCTGCCTTGCACCCCACAG
Seq C2 exon
CCCAACCTCTGCTATCGAGACCTACACAGTGCCTTGCTATTGGATCCCAAGCACCCACAGGCCAAGGTGCTGCTCCAGGTGATGGTGGGCCAGGCCGAGCAGGCACGCCAAGATGCCGGGGTCCTGGCCGTGCAGGGCAAGTTGCAACATGCGCTGCAGTGCATCAACTGTGCCATTGAGAACAACCCTCTGGACCCCAGCTTCTTCCTCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509:ENSBTAT00000043180:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(30.6=43.2)
A:
NA
C2:
PF134141=TPR_11=PU(61.8=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCCCTCAAAAAGCAT
R:
GGAAGAGGAAGAAGCTGGGGT
Band lengths:
334-2141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development