HsaINT0174081 @ hg38
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127720266-127723333:+
Coord C1 exon
chr9:127720266-127720395
Coord A exon
chr9:127720396-127723118
Coord C2 exon
chr9:127723119-127723333
Length
2723 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CCACCCATGGCCTCCTGCAGCCC
3' ss Score
5.47
Exon sequences
Seq C1 exon
CATGGCCTGTCTCCTGGCCCTCAAGCAGCATCAGGCCTGCCTCACGCTCATCACCAACGAGCTGAAGCAGGACACCACCAACGCCGATGTCTACATCTTCCGGGCCAGACTCTACAACTTTCTCCAGAAG
Seq A exon
GTACAGTGGGGAGGGCGGGCAGGGGCATGCCCCCCAACCTGGGAGTCCTCAGTGTGCCCCAAGATTGCAGGAAGAGGCAAGGCTGTCAGCCAGCCCAGAAGCCCCATCCCACAGTGCAGTGGGTGCTGTCCTCCCTGGGAAGAGGCCCACACTGGCCTGGACCACTCAACTACCATGTCAGGTCCTTGTTCCACTGTTGCTCAGCCCTGGCTCTGTGCTAGGCCTGTGCTGCACCCCATGGGAAGCAAAAGATGAGAGAAGCATGTCATCCCTGTCCGGATGGAGCTCACACCCTGGGGGAGGTGTCCCTGGGCAGATGAGCACACTAGGAGGGCTTTAGCCACAATCCTCTGAAGCCACACACCAGGGCACCCAGGGCACCTAACATGAGGTAGCCCTTCCCCCTTCCTCCCTCCTTCTTTCTTCCCTCCTGCCTTCCCTCCTCCCTTCCTCCCTCCTCCCCTTCCCCCTTTCTCCCTCCCCCTTCCCCTTCCTCCCTCCTCCTTCCTCCCTCCTCCCTCCTCCCTTCCTCCCTTCCCCCTTCCTCCTTTCCTCCTCTTCTTCTTTCTCCTCTTCCTCCCTCTTCCTTTCTTTTTTCCTGTTTGCCTCAATGAATCATCCCTACTCCTGACCACCCACACAACCTGGGCTGGGCACAGGGACAGACAGTACAGGGAACAGCTTGGGAGCAATAGAAACTTGGGGTCACAAGGAAGGAGGTGGAGGGGGTGCTGGGCACCAAGGAGAGGAGGGCAGGGATGAGAAGTCTCCCTGGAGTCAGTGGGAGCCTCCACCAGGTGTCCCCAGGGCAGGGGGCTTTAGGAAGATCATTCTGGTGTCCGCAGGGAGTGTGGGTCAGCGGGGAGGGCTGGAGGCCAGAGCCTGAGAAGGAGGCTGGGCACCATTGCAGGGTGGGGTGAGGTGGAGGGAAAGGTAGTCATGAGGGCGGCAAGGAGGGGCAATTCCCACAGCCCTTCAGAAGGCAGGGCCGGAGTCTGGCTTGGGGGTGGGCTTGAAGGAAAAGGAAGGATCCAGAAGGGTGCCTGGTGTTCTGGCTTGGCCTGGGTGGATGGGGAGCTGGGAAGCTAGGATGGGGAGGAGCAGGTGGGCGGGGTGGGGCGGGTTCACCTCATTCTCCAAGCATCCTGGGTGCGGCCGAAATGCCAGCCTGCATTGCAGGAGGGAGCGCCACCACCCTGGCAGGAGTGACTTCGGGGAGTGCAGTCCACCCTGGCAACTCCTCCCTGTGCCCCGGGGCTGGGCTGCAGCCTCCCACAAGCGATTCAGTGGCATGAGACTAGTAATTTGTTTTGTTTTGTTTTGTTTGAGACAGAGTCTCACTCTGTCACCTAGGCTGGAGTGCAGTGGCGAGATCTCGGCTCACCACAACCTCTACCGGGAGGTTCAGGCAATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCCAGCTAATTTTTGTATTTTTAGGAGAGACAAGGTTTCGCCAGGTGATACCCCCTGCCTCGGCCTCTCCAAGTGCTGGGATTATAGGTGTGTGCCACTGCGCCCGGCTGAGACTAGTAATTATTGATAATTATTGGTGACTGTTGTGATTTTAGCCCCTCCGATACGTAGGCGTGTTCTCAGCACTTTGCCCCTGCTTAGCTGTGAGGCTCGCAGCAACCCTTTGGGATAGAGACACACTGTCCTCGTTTCACAGAGGAAGAGCCAGCCCCAGGTGACTTGCCCAAGGTCACACAGCCTGTTCCCAGTGGCATTGCCTGGAGCCCAAGGCTGCTTATGCCGAAGCCCTGCCCCTAGCTCCTGCCATTTCCCTCCCTCCCTCCACCCACACCTGCTGTCCACACCATCCCGTTCACCTGCCAGCCAGTCACCCCGCAGGGAACAGGGTGTTGTTGAACTGTCTGTTGCCTGGCTGAGCTGCGCCTTCCTCCTCCTAGTGGAAGGGACTTGCTGGGGGAGGTTTCCACTGTACCCAGGCCCGAATCTGGGCTTGGGCAGAGGAGTCTTGGGCTCAAAGGTCAGGGAGGAGAAGAGGGAGTGCAGGGGAGGGGAGGGAGGACACAACCGTCACAGTCAGGAGGTCACATGCTCCCCGCACCTTGAGTGGGCTTCACAGAGGCCTGACAAGGAGGTAGCATCTGCAGAAACCACTGGGGCTGGCCTGGCTCACCTGAGGTCACATCTGGAAAGGGCCAGCTGGCATGGGGCCTGGGATGGAATTTCTCCACGATGCTCCCTGTCTCCTTCAAGAGGCAGAAAGGGGCCAGGCATGGAGACTCAAACCTGTAATCCCAGCACTTCGGGAGGCCAAGGTGGGCGGATCACCTAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATAGTAAAACCCCATCTCTACTAAAAAATAATACAAAAATACAAAAATTAGCCAGGTGTGGTGGCACGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGAAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGACCACGCCATTGCACTCCAGCCTGGGTGACAGAGTGAGAATCCATCTCAAAAAAAAAAAAAAAGCAGAAAGGGTGGAACATGGAGGGATGTGAGGGGCACGGAGGAGGCATGGTGTGATGCCACCCTGCTGAAGAAAGGCCTCTAGGTCCCGTGGCTCAGTTGGTCTGTGCCCCTGATGCCACCCATGGCCTCCTGCAG
Seq C2 exon
CCCCACCTCTGCTACCGGGACCTGCACAGCGCCTTGCTGTTGAATCCCAAGCACCCGCAGGCCAGGATGCTGCTCCAGAAGATGGTGGCCCAGGCCCAGCAGGCGCGCCAAGATGCGGGGATCCTGGCTGTGCAGGGCAAGCTGCAGCACGCACTGCAGCGGATCAACCGTGCCATCGAGAACAACCCTCTGGACCCCAGTCTCTTCCTCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094:ENST00000373289:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(62.7=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains