RnoINT0157502 @ rn6
Intron Retention
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11806477-11808370:-
Coord C1 exon
chr3:11808241-11808370
Coord A exon
chr3:11806692-11808240
Coord C2 exon
chr3:11806477-11806691
Length
1549 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
CTGCCCTGCCACCCCTGCAGGCC
3' ss Score
9.72
Exon sequences
Seq C1 exon
CATGGCCTGCCTGCTGGCCCTCAAGCGGCATCACGACTGCCTCTCTCTCCTCACGAGGGAAGTGAAGCAGGGCAGGGCCAGCGCTGATGTCTTCATCCTGCGGGCTCGGCTCTACAACTTCTTCCAGAAG
Seq A exon
GTAGTGCACAGTGGGCAGGGCAGCGTGTGCCCTGGAGACCTGCACCCCACCCCCAAGGTGTCTCAAGATGCTAAGGAGGCAAGGCCAGCTATCCACACAGTACCTAAGGACCCTGTCTACTCAGGGTCCTTCATCACTCAGCCCTGGCCCTGTGGTAGGAAACTGAGCCACATCCCCAGCCCTCATCTGTGTGGTGTCCAGGACACTAGACATTAGCTGAAGTACTCCTTCCTCTTGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTTTGTTGTTCTGTTTTGGGTTTTTTGTTGTTGGTGGTGTGGTGGGTGGGGTTTTTTTGGGGGGGTGTTCTTTTGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTAGAACTCACAGATTGACCTGTTCTTTCTGGGATTAAAGGTGTGCACCACCACGCCCAGCATCCTGTCTTCCCTTTCACACTTGCACAGTGGGCAAGTTTGAAAGCTCCTTGCCTCCCTGCTGAGATGAGCATGGGGACAGAGGACGCAGGGAACAGCTTGGGAACAAGGGATGCAGGGTCACAGGTTGAGAATGTAGCAGAAAAGAGGGGCCTGAAGGGAGAGGAGAATAGTCTTCTCAGTAGAGTGTTCTCTGGGACAGCGACCTTGTCCTCTAGGGGATGCTGACTGGAGTTGGTCAGTTGGATGGACAGGTCCTGGGAGGAGGCCGAGTGCAGGAGGAGGAAGGGGTGAGGGGAATGAGGAAGTATCCAAAGCCCTGATGGAATGGAAGGAAAGAGGCCCCTGAACAGTGGGCAGCATACTAGGTAAACGGGGCGGAGGGGGCACAGAGAGAATGAGAGGGGGAAGGGTAGATTCACTTCTTACCAGGCCAGGATGGGGAGTGGCTGAGTAAGGCCGGCCAGGCACGTTCTAGCCAGAGGCTGGGCTGTAGTGACTCAGTGGGAGTCCCCTTCAAAGGCAAGAGTCTATTCTTTATGGCTGTCCCCCACCCCCTGCCTTCACTGTGTCCGGTGAGGAGGGCTCTTCAGAACTCAGACCTTTGCCCAGCTTCATCCCGAGACTGCCAGGAACCCCAGCCAGCCAGTTTTCCAGCCCAAGCCCACCTCAGCCACTCCCCATCTCACCTGCTGCCAGTCCTTCCGGGTTACCCTCCAACCACTTACCCACAGGACCGCAAGGTGCTTGCTAAGACTGTTGTCTGGGCTAATGTGCACAACAGTGAAAGGCATTTGCCTAGGGATAGTCTCTGCTCGCACCCAGACCTCAGTCTGCCCTTGGTCACAGCTGCTGTGGGTGTGGAGAAAGGATACAGGAGGGGATGAGGCTGCACAGTGCCCTCACCACAGGACTCCTACAGGAGATAAGATCAGCACAAATCACCAAGGCTGACCTGCCTCATTTAAGAGGCCAGAAATGTAGAACAGTAATGCGGGGCACAGAAGGGATGGTGTGGTGGTAGCTTGTTTTCTAGAGGCCTGCCTTCCTCAACCCCCTACTGGGGCTATGCTGCCCTGCCACCCCTGCAG
Seq C2 exon
GCCAACCTCTGCTATCAGGACCTCCGAAGCGCCTTGCTCCTAGATCCCAAGCACACACAGGCCAAAGGGCTGCTCCAGAAGATGGTGGACCAGGCCAATCAGTCCCTCCAAGATGCCAGCATCCTGGCCGTGCAAGGCAAGCTGCACCGCGCACTAAAGTGCGTCAGCTGTGCCATTGAGAACAATCCCTTGGACCCCAACTTCTTCCTCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650:ENSRNOT00000071233:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(32.8=47.7)
A:
NA
C2:
PF134141=TPR_11=PU(62.7=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCGGCATCACGACTG
R:
CGGAAGAGGAAGAAGTTGGGG
Band lengths:
326-1875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]