RnoEX0094613 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11805579-11808370:-
Coord C1 exon
chr3:11808241-11808370
Coord A exon
chr3:11806477-11806691
Coord C2 exon
chr3:11805579-11805823
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTGCCACCCCTGCAGGCC
3' ss Score
9.72
5' ss Seq
CCGGTATGG
5' ss Score
8.44
Exon sequences
Seq C1 exon
CATGGCCTGCCTGCTGGCCCTCAAGCGGCATCACGACTGCCTCTCTCTCCTCACGAGGGAAGTGAAGCAGGGCAGGGCCAGCGCTGATGTCTTCATCCTGCGGGCTCGGCTCTACAACTTCTTCCAGAAG
Seq A exon
GCCAACCTCTGCTATCAGGACCTCCGAAGCGCCTTGCTCCTAGATCCCAAGCACACACAGGCCAAAGGGCTGCTCCAGAAGATGGTGGACCAGGCCAATCAGTCCCTCCAAGATGCCAGCATCCTGGCCGTGCAAGGCAAGCTGCACCGCGCACTAAAGTGCGTCAGCTGTGCCATTGAGAACAATCCCTTGGACCCCAACTTCTTCCTCTTCCG
Seq C2 exon
AGGCACCCTGCGCAGACGGCTCCAGCAGTATGACCCAGCTGTGGAAGACTTCCTGAAGGCCCTGGATATGATGACTGAAAGCCAGGACAACCTAGTGAAGCAGGCGCAGCGCCAGCTGCTGCTGACTTACAACGACTTTGCTGTGCACTGCTACCTCCATGGTGCCTATCAGGAGAGTGTGCTGCTGCTAAACAAGGCTATCAGAGACGAGCAGAACGAGAAGGGCCTGTACATCAACCGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(32.8=47.7)
A:
PF134141=TPR_11=PU(62.7=58.3)
C2:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGACTGCCTCTCTCTCC
R:
TTTAGCAGCAGCACACTCTCC
Band lengths:
293-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]