BtaEX6046276 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98412758-98415812:+
Coord C1 exon
chr11:98412758-98412887
Coord A exon
chr11:98414695-98414909
Coord C2 exon
chr11:98415568-98415812
Length
215 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTTGCACCCCACAGCCC
3' ss Score
7.97
5' ss Seq
CCGGTATTG
5' ss Score
4.48
Exon sequences
Seq C1 exon
CATGGCCTGTCTCCTGGCCCTCAAAAAGCATCGTGAATGCCTCTCATTCGTCACCAAGGAGGTGAAGCAAGGCACCACCAATGCGGATGTCTACATCCTCCGGGCCAGGCTCTACAACTTCTTCCAGAAG
Seq A exon
CCCAACCTCTGCTATCGAGACCTACACAGTGCCTTGCTATTGGATCCCAAGCACCCACAGGCCAAGGTGCTGCTCCAGGTGATGGTGGGCCAGGCCGAGCAGGCACGCCAAGATGCCGGGGTCCTGGCCGTGCAGGGCAAGTTGCAACATGCGCTGCAGTGCATCAACTGTGCCATTGAGAACAACCCTCTGGACCCCAGCTTCTTCCTCTTCCG
Seq C2 exon
GGGCACCATGTACCGACGGCTCCAGGATTTTGACTTGGCAGTGGAGGACTTCCTGAAGGCGCTGGACATGATGAGCGACCACCAAGAGGAGCTGGTACAGCAGGCCCAGCGCCAACTGCTGCTGGCCTACAACGATTTCGCGGTGCACTGCTACATGCAGGGAGCCTACCAGGAGAGCGTGCTGCTGCTCAACAAGGCGCTCAAGGACGAGCAGCAGGAGAAAGGCCTCTACATCAACCGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(30.6=43.2)
A:
PF134141=TPR_11=PU(61.8=58.3)
C2:
PF134141=TPR_11=PD(36.8=30.1),PF134141=TPR_11=PU(64.7=53.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCCCTCAAAAAGCAT
R:
CTGGTAGGCTCCCTGCATGTA
Band lengths:
292-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]