Special

MmuEX0049441 @ mm9

Exon Skipping

Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32624618-32627538:-
Coord C1 exon
chr2:32627409-32627538
Coord A exon
chr2:32625572-32625786
Coord C2 exon
chr2:32624618-32624862
Length
215 bp
Sequences
Splice sites
3' ss Seq
CCACCCCTCCACCCTTGCAGGCC
3' ss Score
9.81
5' ss Seq
CCGGTACTG
5' ss Score
5.61
Exon sequences
Seq C1 exon
CATGGCCTGCCTGCTGGCCCTCAAGCGGTATCACGACTGCCTCGCCCTCATCACTAGGGAGGTGAAGCAGGGCAGGGCCAGCGCTGATGTCTACATCCTCCGGGCTCGGCTCTACAACTTCTTCCAGAAG
Seq A exon
GCCAAGCTCTGCTATCAGGACCTTCGAAGCGCCTTGCTCCTAGATCCCTTGCACGCACAGGCCAAAGGGCTACTCCAGAAGATGGTGGACCAGGCCAAGCAGTCTCTCCAAGATGCCAGCACCCTGGCCGTGCAGGGCAAGGTGCACCGTGCACTGAAGTGCATCAACTGTGCCATTGAGAACAATCCCCTGGATCCCAACTTCTTCTTCTTCCG
Seq C2 exon
GGGCACCTTGCGTAGACGGCTCCAGCAATTTGACCATGCTGTGGAAGACTTCCTGAAGGCAATGGACATGGTGACTGACACCCAGGACAACCTAGTGAAGCAGGCGCAGCGTCAGCTGCTGCTGACTTACAATGACTTTGCTGTGCACTGCTACAACCATGGTGCCTATCAGGAGGGCGTGCTGCTGCTGAACAAGGCTATCAGAGACGAGCAGAATGAGAAGGGCTTGTACATCAACCGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'10-9,'10-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF134141=TPR_11=PD(34.3=52.3)

							
A:
PF134141=TPR_11=PU(62.7=58.3)

							
C2:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000124031





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000068977, ENSMUSP00000088585, ENSMUSP00000123927, ENSMUSP00000124915
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:127723170-127723333 
HsaEX6063117
(TTC16)
Human
(hg19)
chr9:130485398-130485612 
HIGH PSI
HsaEX6063117
(TTC16)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:98414695-98414909 
BtaEX6046276
(TTC16)
Chicken
(galGal4)
chr17:4930488-4930702 
ALTERNATIVE
GgaEX1060918
(TTC16)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCACTAGGGAGGTGAAGCAGG

				
R: 
GCCCTTCTCATTCTGCTCGTC

				
Band lengths: 
306-521

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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