HsaEX6063117 @ hg38
Exon Skipping
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127720266-127724364:+
Coord C1 exon
chr9:127720266-127720395
Coord A exon
chr9:127723170-127723333
Coord C2 exon
chr9:127724120-127724364
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCTTGCTGTTGAATCCCAAGCAC
3' ss Score
2.9
5' ss Seq
CCGGTACTG
5' ss Score
5.61
Exon sequences
Seq C1 exon
CATGGCCTGTCTCCTGGCCCTCAAGCAGCATCAGGCCTGCCTCACGCTCATCACCAACGAGCTGAAGCAGGACACCACCAACGCCGATGTCTACATCTTCCGGGCCAGACTCTACAACTTTCTCCAGAAG
Seq A exon
CACCCGCAGGCCAGGATGCTGCTCCAGAAGATGGTGGCCCAGGCCCAGCAGGCGCGCCAAGATGCGGGGATCCTGGCTGTGCAGGGCAAGCTGCAGCACGCACTGCAGCGGATCAACCGTGCCATCGAGAACAACCCTCTGGACCCCAGTCTCTTCCTCTTCCG
Seq C2 exon
GGGCACCATGTACCGACGGCTCCAGGAGTTCGATGGGGCAGTGGAGGACTTCCTGAAGGTGCTGGACATGGTGACCGAGGACCAGGAGGACATGGTGCGGCAGGCACAGCGCCAGCTGTTGCTGACCTACAACGACTTTGCCGTGCACTGCTACAGGCAGGGCGCCTACCAGGAGGGCGTGCTGCTGCTGAACAAGGCCCTCCGGGACGAGCAGCAGGAGAAAGGACTCTACATCAACCGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-'9-12,'9-11,10-12
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(62.7=58.3)
C2:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCAGCATCAGGCCTG
R:
CGTTGTAGGTCAGCAACAGCT
Band lengths:
245-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains