GgaEX1060918 @ galGal3
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
NA
Coordinates
chr17:5559583-5560298:-
Coord C1 exon
chr17:5560217-5560298
Coord A exon
chr17:5559898-5560112
Coord C2 exon
chr17:5559583-5559824
Length
215 bp
Sequences
Splice sites
3' ss Seq
TGACCCGGCCCCCTGGGCAGCTG
3' ss Score
7
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GCTTAACAGAGAACTGGAGGAGGATGTGAGGAATCCTGATATGTATGTGCTCCGTGCCTTCTTCTACAAACGCTCTGGGCAG
Seq A exon
CTGGCCCTGTGCCTCCAGGACATCCAACAGGCCCTGAAGCTGGAACCTCAGCACAGAGCTGCCCAGGTTTTGTGGCACAGGCTGGTGAGACAAGGCCAGGAGGCCAAAGCCCAGGCAGTGTTGAAGGCCTTGCGTGGAGACCTGCGTGGGGCCCTGTACGAGATCAGCTTTGCTATTGAAAGTGACCCGTTGGCTGCTGAATTCTTCACCCTCAG
Seq C2 exon
GGGGACCCTCCTCCGGCAGCTCAAGGACTTCAGTGCAGCCAGCAAGGACTTGGCCAGGGCTAGGGAGCTGAGTGCCCTGGGGAGCCCAGAGGCCCGGGAGGCTCAGAGGCAGCTGGTGCTCACCTACAATGATTGTGCTGTGCGCTGCTATGCCCTGGGCCAACTTGATGAGGCTGTAAAGCTCCTTGGTGAAGCTCTGCAAAATGAAAAGACAGAGCAGGGACTCTACGCCAACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF134291=TPR_15=PU(15.1=92.9)
A:
PF134291=TPR_15=FE(82.6=100),PF134241=TPR_12=PU(12.2=13.9)
C2:
PF134291=TPR_15=PD(0.1=0.0),PF134241=TPR_12=PD(86.6=86.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGGATGTGAGGAATCC
R:
CTCTGTTGGCGTAGAGTCCCT
Band lengths:
307-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]