BtaINT0154317 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30485760-30486818:+
Coord C1 exon
chr2:30485760-30485870
Coord A exon
chr2:30485871-30486736
Coord C2 exon
chr2:30486737-30486818
Length
866 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
3' ss Seq
ACCAACTTTTACCTTTATAGATG
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATAATGCTGGAGCTGGCCCGATTATACCTGCTACAAGATGACCCTGACGCCTGCCTGCGGCACTGCGCGCTGCTTCTCCAGAGCGACCAGGACAATGAGGCCGCCACCATG
Seq A exon
GTTAGTCCGGGACACTTCAGTGCCAGCAGGGCCGTCGTGTCTTGTATTTATTCCATGTGGCAGTTTCAAATTTTACCTGATAAAACTAATAGTAGATGTGAGGCCCGGCTCTTGTTGGCTTTTGGGAAAATTAATATTTTTAAGATTATTAGCACATTTTTAGTTTTTCTGTATGACTAAAAGGATGCCTGGTCAGGAATGGTTCCTGTGGTCAAGTTACTTAAACATGCTGGAGTTTTTAACAGTTTCAGTCAGACTTTCTGAATTACAGAGAAAATTCTTTGTATAACATTTTAAGACACTGTATTTTAAATAGTTTTGTCTTTCTCAATTTTATGAGGGTTGAGGTTTTTGTTAGCTTTTCAAACAGCTTCATAGATGACAGTTTGTGAGGTTCATTTAATAATTTGACAAATGAATCACTATAACTGAAAAATACAAGAACTCTCCCTTTTAAAACACATAATAAGAAAATCTCACTAAGTCTTGCTAATTTTATATTCCTTTGAAATATTATTTTGGGTTTTTAAAAGATTTTCTTGTTATTTTTACAAAGTCCAGTGAGGTTTCTTCTCTATGATAACACATAGAGTGCAGTTTCCTTCAAATTTCTGTTTTAAAAATAACTGCTTAAAACATATTTTCTGCTAAAAATAGTTTTTGTGAACAGAGAGATCTGTTTCACATCCTTGACGGATCTCAGTGCTAATCTGCTTAAGGTGTACTTGAATTTAAATGGCTCCGTTTTATAAAACTTTGCCCTCGTGTTTCTCCTATGTGTCTTCATAGCAGTCAACCTTGATAGGAATAACATGCTTTGTAAAATCACATGGCTGTATTTTTATAACCAACTTTTACCTTTATAG
Seq C2 exon
ATGATGGCAGATCTCATGTTCAGAAAACAAGACTACGAACAAGCCGTGTTTCATTTACAACAGCTTTTAGAACGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
NA
C2:
PF145591=TPR_19=PD(5.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAATGCTGGAGCTGGCCCG
R:
TGGTTTTCGTTCTAAAAGCTGTTGT
Band lengths:
192-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]