HsaINT0174185 @ hg19
Intron Retention
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166755196-166756390:-
Coord C1 exon
chr2:166756280-166756390
Coord A exon
chr2:166755278-166756279
Coord C2 exon
chr2:166755196-166755277
Length
1002 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
3' ss Seq
ACCAACTTTTATCTTTATAGATG
3' ss Score
9.29
Exon sequences
Seq C1 exon
ATTATGTTGGAACTGGCACGATTATACCTGGCACAAGATGACCCTGATTCCTGCCTGCGGCAGTGTGCTCTACTGCTTCAGAGTGACCAGGATAACGAAGCTGCTACCATG
Seq A exon
GTCAGTCCAAGGAACTTCAGTACAATAAAAGCACTTGTGTTTTATAAGTTTTAAATTTTACCCCATGGAACTACTACTAGATGATGAGGCATGGCTCACGTTGGCTTTTGGAAGAAATAACATTTTTCTAACATTACTACATTTTACCAATAAAGACCCAGAATCATTAGGATTTTATTTATAAGAAAGATAAACCTAGGTCAGGCTTTTACATGCCCTTTTGGGTCTAGTTATTTTTTATTTATGCCTAAGGGGATGCTTGGTCAGGTGGAGTTCATGTGGTAACACTATAATTTGCTAAGAACTAACTTTTAAGTACTTAGGAATGCTGGACAAATTTAAGAGTTTGGGTGGAATTTTTGGAGTTACAGGGGAAAAAAAACAACTTCATATTATCAGTCTAAGACAGTCTGTTTTGAATAGAGTTTTTTATTTTTTCTTATTTTTACGTGGGCTAAAATATTTGTTAGCTTTGCAGACAGCTACACAGATGACATTTTGTGAGGTTTATTTAAGGTTATTGTGGTTAAAAAGAAATATATGAAATCTGCATTTTTAAACACATAATAAGAAAAATGTCAGTAGGTCTTGCTCATTTTTAATTTTTCAAAATAGTTATGATTTAAATTTTGTTTCATTTTTGAATCGTCTCATTATTATTTTAGTCAGGTCCAGTGAGTATCTTTTCTACAACAGCACATAGAGTGTGCAATTCCTTTCAAATTTCTGTTTTTAAAACAATTGCTAGAAACATATTTTTTGCTAAAAATACAATTTTGCAAGCAGAGCAATCTGTTTCACATCCTTGATTATCTTCTGTTACACTGATCTGCAAGTTATTCTGCACAAGGTGGGCTTGAATCTTAAATGCCTCCTTTTTATAAAATGCTGCCCCCTCCTCATGTTTATCATCTATATTTTTCTAGTGCTAAATCTTGATTGGAAGAACATGTTGTGTAAAATACATGGCAATATTTTTAGAACCAACTTTTATCTTTATAG
Seq C2 exon
ATGATGGCTGATCTCATGTTCAGAAAACAAGACTATGAACAAGCAGTGTTTCATTTACAGCAGCTTTTAGAACGTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-TTC21B:NM_024753:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
NA
C2:
PF145591=TPR_19=PD(5.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTTGGAACTGGCACGATT
R:
TGGCTTACGTTCTAAAAGCTGCT
Band lengths:
190-1192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)