BtaINT0155861 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010206 | UAP1
Description
Bos taurus UDP-N-acteylglucosamine pyrophosphorylase 1 (UAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046404]
Coordinates
chr3:6915841-6918417:-
Coord C1 exon
chr3:6918213-6918417
Coord A exon
chr3:6916017-6918212
Coord C2 exon
chr3:6915841-6916016
Length
2196 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATCTGCTTTTCTCTTGCAAGGTA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GACTTTTCCAGATTTCTCAGAACAAAGTGGCAGTTCTTCTTCTAGCTGGTGGGCAGGGGACAAGACTCGGTGTTGCATATCCCAAGGGGATGTATGATGTTGGTTTGCCATCCCATAAGACACTTTTTCAGATTCAAGCAGAGCGTATCCTGAAGCTTCAGCAGTTAGCTGAAAAATATCATGGCAGCAAATGCATCATTCCATG
Seq A exon
GTAAGATATATCTCATTATGGGAGAGTGTCTGAACATATATTGGCATATAATATTCAAAATGCATATATACTTTATTCATAAGCAGAGGTGTTTCCTGTTACTACAGATTTTCTTGGGAGCTGTACTTTATATGTTAAAATCAATATATATTATAGCTAGGTGGATAATCACTATAGCCTTAATGAGCAATATATACTTATTTCCAACTTTAACTCCCACCTGAGTACCTTTGGATCCTCAGAGGGTTCTCTCAGTCTGTAAACTTCATACTGATTGGTAGTTTGTCTGTGTACAGAGTTTGATTGAAAATCAGTTTCCCTCTGAAATTTGGAGGTATCGGTCTATTGTTCCAGCGTTGCTTTTGAGAGATCTGTTGCCATTCTGATTCTCAGTCTTTTTTTCTCCCTTTTTCCTCTGAACGCATTTGGAGTCTCTTCTTATCTTTAGTAACTGAAATTTCCTGATGATGTATAGATCTGTTTCCAGTCACTGCTGTGGGCACTCAGTGGATTCTCTCACTCTAGAAACTCATGTCCTTAAGTATTGGGTTATCTTGTCCTCCTGAAACCCCACCCTTTTGCCCCCCCCCCCCCCAAAACAAAACAAAACAAAACAAACCTGAAAGCCTCACTGATTTCTCTGCTGTGGGCCAAACTTGGATTCTGTCTCTGCTTTTATGCCAGCTCTCCAGGGCCTATCTCAGCCATTGTTCATCTTCTGAACACCAAGAGATTATGGGAATTCTGCTCTGTTTTTTAAAAGGTTTTGATTTAGCTCTTGAATCTGTTTCTCAGAGCAGCTTTGGAAGTTGTCCTGTTTTGAGGGGGAAACCAGCTGTGTGTTTGAAATCCCTGATGTAACTAATCTTGTTATTTTAGCCCCAGGGGACTAACAAAGCTCTGCTGGTTTCTCTGGCCTGCCTGGTCCAAGCTCAGATTCCTTACCACTGGCCTTTGCCCCAGATCAGCAAATACCCCCAGGAAAAGGCAGCTGCATATCTGAAGGTCTCCTCTGAAAGATTCTCACTATCTTAAATTTTAAGTTCTAATCCATGTTGCTTTTATAGCTCTCTGATGCCTTTAAAAATAGGCTTTTTATAATTACCTCAGCTTTTCTAGTTCTTAAGAAGGATATTGGCCAGTTGTAAACTGTTTTTTGTGGGTTTTTTTCATCTTGGTTCCCTTGGGGACTTTTGAGGGACATCTGTGTTTTGAGTGGCCAAAATTCTACTTACAAGCCTTAGTGTCCCAACTTTCATGTTGGATTTTCTTCTCTTTCTTTCTCCTCACAACTCAGAGTTTATTTTTCTTACTTGAAACAGTTTAGTCCCTTTTCATTTGAATCATGATGCCCAAAGATTTTGTGCCCAGAGTTCAAATATCCAGGATAATTTGTTAATCAGGCAGATACTGACTGTCCTGGGAAATTTTATAGTTTTCTTCATTTTTTTCATTTAACAGGTATTAAGTGAGTACCTGCCTTTAGGTACTGGGAATATATCAGTAACCAAAACAGATAAAAATCCCTACTCACACATAGTTTACATTTCAGTAAGTAAGGGCAAAAGCTATTGTAGTCGATAATTACAATTTTAGATAGAATTTTTTTCTCTTTTACTACATTGGCATGGGTTGGATTTTTGTGACAACAGAGTGTATACTTATACTTTTATGATTGTAAATAAAGGGTGAGCAGAGCCCAAATGTCATTTCAAAATTTTAGTAAAAAGAACCGTAAGAGGTAATTAGAATGTATTGCATTTATGCCTTTATCCCTTTTATTAGAATAGGAGAGATGTTGACTTAGACTATACTTTTCACAGTTCTGAAATGTTTTCTTGAGCCTCTGTTGCAGGTTCTCTGTTACAGGAAGTGTGTTTTAATATTGTGTTACAGAGTTATTTTACAGCTCAAGCAGCAGAACTTTATTAAAACAGGCAGCAGATAGTATACTCCGGAGACATGGGAGCGGGCCAGCCCCCAAGGAGAGGCCACAGATTTATTTTATACATAAGGATTAATGAGAGGAAATTCCTGTTGGGTAGCAACCAATGCTGCCTTATTCAGGAAAGGGATGAAGGAAGTGAAAGCAATAAACAGTGCTCTCAAAAATTTTCTTTATCTTAGGAAATAAACTTTATTTTGCCCTAATTCACATAGCATTATTGCTTAGAAGATCTGCTTTTCTCTTGCAAG
Seq C2 exon
GTATATAATGACCAGTGGCAGAACAATGGAATCTACAAAGGAATTCTTCACAAAGCACAAGTACTTTGGTTTAAAGAAAGAGAATGTAATCTTTTTCCAGCAGGGAATGCTGCCTGCTATGAGTTTTGATGGGAAAATTATTTTGGAAGAGAAGAATAAGGTTTCTATGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010206:ENSBTAT00000013466:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.9=100)
A:
NA
C2:
PF0170413=UDPGP=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]