RnoINT0158903 @ rn6
Intron Retention
Gene
ENSRNOG00000002926 | Uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:RGD Symbol;Acc:1561967]
Coordinates
chr13:88480525-88483205:-
Coord C1 exon
chr13:88483001-88483205
Coord A exon
chr13:88480701-88483000
Coord C2 exon
chr13:88480525-88480700
Length
2300 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
AAAATGGACTCTCTTTGCAGGTA
3' ss Score
8.58
Exon sequences
Seq C1 exon
GACTTTCCCAGATTTCTCAGAACAAAGTAGCAGTTCTTCTTCTAGCTGGTGGGCAGGGGACAAGACTTGGAGTCACGTATCCCAAGGGCATGTATGATGTGGGCTTGCCATCCCACAAGACACTTTTCCAGATACAAGCAGAACGTATTCTGAAGCTGCAGCAGTTAGCTGAGAAACAGTATGGCAACAAGTGCACCATCCCCTG
Seq A exon
GTAAGCGGGTCTCATGCTGAAGCATCTGCTCTGTAGCATTCAGATGTGTGTAACTTACTGTCAAGAGGACACGCTTGTTACCAGTGATCTATGAAAGGCAACCCTACATATGCTAAAAGTAATATATGTTATAGCTAGCTGCCCTCAGTGGCTTTACTGGGAATATATACTCACTTTTATACCCTTAGATAAGCACCTTAAGAATACCTTTCAGTACCCAGCAGACCCTCAGTTCGGAAACTTCTTACTGACTGGTAGTGTGTCTAAAATAGGCCTTCTGGTTGAAAATTAATTTCCTCCTGAAATCTGAAGGTGTTGCTGCCACATGTCCAGTGTCATTTTGATCCCTAATCATTTTGTTTCCTCTCTCAAGCATTTGGGTTTCTCCTTCATAGTGTCTTACACCTCGTGATAAAGTGGTATGGCTCATTAGGCCTTTTCTGTCTAGCAAATCAGATCCTAAGTACCAGGTTAGGTGGTTCGTCCCTCTTCCCCCATCCCCCACCTCTTCCACATGGTGGCTTTCCCCAGAGATGAAAGCCGCGTTGACGTCTCTGCTATGGGTCCCATTTGTTTCCTCAGCAGCTACTGGGGTGCTGCATGCAGGGTCTCAGTCTTGGTCACTGCCTCCCAAGCACTGTGAGTGACACTCAGGTCACTGCCTCCCAAGCACTGTGAGTGACACTCAGGTCACTGCCTCCCAAGCACTGTGAGTGACACTCAGGTGGTTCTGCACTGCCTTTCACTTTTTCCCTTTTTCTTTAGCTCTCTGATTAATTTCCTGGAGCAGTTAAGGGGAACCAGCTATGTATCTGACATCCCTCAGGGCCTTGATCTTATCACTTCAGTCCCACAGGACCAATCAAAACTGCTGGTTTTCTGTCTCCCAGCAACAGCCTCCAGTCCCAGTGCAGACTCCCTAGCCTGTGCCAGCATCAGAAAAGACTGTCAGGAAGAAGCAGCTGCTTTCCTTAATTCCCTTCGGAAGATTCTCCCTCTCTGGGGCTTCAGGTCTGAACCATGCTGTCCTCTGATTACTTTGAAGACATGATTTTTGGAATAATTTTCCAAGATATTCAAGTTCTTTTGCAATATAAAAGTACTGGGATGCTGTGAACTTTTTTTTTTTTTCTCATCTTGATCCTGTTGGGGGTGATTAAAATGCCCCAAGTGATTTGTTTGGCATACATATTTACTGTGGTAGGAAATCATGCCATCTTCTTCATCAATTTAAATATTATTTTTGTTTTATCTTCTGCTTGAATGTCTGCACTACATGCATGCAGTATCTGCGAGGCCAGAAGAGGGCCTCAGATCCCCTAGAAATGGACTTCAGTGGTCATTAACTACCAAATGGGAACCAACCTGAGTCTCCTGTAAGAGCAAGTGCTCCTAACTGTGAGCCATCTCTCCAGCTCTGTAGTTCAGCAGTTGATTTATTTAATGATTATTAGTTGGGTTGCTGTTTCTAAGTCCTAAGTATTGATCACTAACTAAAACAAAAATCTCAATTTTTATGTAGCTTAAATTCTAGGAAGGCCTGAATCACTTTAGTTTAGTTTCTAACTGTAGTTTTAGATAGGATCTTTTTTCTCCCTTGCCATTACGTCATGAATTCAGTTTTTTGGAAAATGAAAGATTTGTTTTAGTTTTTTATGTGTATAAATCTTTTACCTGCATTATGTCTGAACACACTTATGTGTGCCTGATGCTCAGGGAGACCAGAAGAGGTGCTGGATTCCTAGAACTGGAGTTAGAGACAGCTGTGAGCCACCATGTGGATGTTGGGAATTGAATGATGTCCTTTGGAAGAGCAGACAGTGGTTTTAACTGCTGATTGATCTCTCGAGATCCTCAATTAAAGTTTAGTGGCAACAGAATGTATAATTTTACTCCCATCATTATAACTGGATGCTGAGCAGAGTCAGGGATCTCTCTCAAATTTTAATAAGAACCACAAGAAAATACTAACCTGTGTTGTTGTTACCTTTTCCCTCTATTTCGAGTAGGAGGTTTAATTTTAGCGTACACTTTTACAGAGTTATAAATGCTTACGCCTCTCGATATGGGTTCTTTGCTTCAGGAAACAGGTTTGATATTTTCATAGGCTTATTTCGTGCATAAGGATCGGTAAAAATCCTGGAAGAAATAAAAGAACTAATCAGTATGTCTGAGCCAAAAAAATGATGAAGTAAGTCAGATATGAAGCCAGGGCTCTCACAGTCTCTGCAGCTTGGGAATGTATCGAGAGCACCATCTTTTGCCCTAATTCTTGCTTATAAAATGGACTCTCTTTGCAG
Seq C2 exon
GTATATAATGACCAGTGGCAGAACGATGGAATCGACAAAGGAGTTCTTTACAAAGCACAAGTTCTTTGGTTTAAAAAAGGAGAACGTGGTCTTTTTCCAGCAGGGAATGCTGCCTGCTATGAGCTTTGATGGGAAAGTTATCTTGGAAGAGAAAAACAAAGTCTCTATGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002926:ENSRNOT00000058560:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.9=100)
A:
NA
C2:
PF0170413=UDPGP=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]