BtaINT0155868 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106160770-106161862:-
Coord C1 exon
chr11:106161556-106161862
Coord A exon
chr11:106160975-106161555
Coord C2 exon
chr11:106160770-106160974
Length
581 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ATGGTGCCCCCTGCCTCCAGGTT
3' ss Score
10.19
Exon sequences
Seq C1 exon
GCGGCCGGCGGCGGCAACATGGCCTCGGAGGCGGACCTGCGCGCCCGGCTGCAGCGCGCCAGCCAGGAGCACCTCCTGCGCTTCTGCGCCGAGCTGGCGCCGGAGCCCCGCGCCGCGCTGCTGGCCCAACTCGAGGCCCTGGAGCCCGAGGCGCTGCGCCAGCACTGCCAGCGCGCGGCTGCTGCCTGCGCGCGCCGCCCGGGCCCGCCGCCCGACCTGGCTGCGCGCCTGCAGCCCCTGCCTCTTGAGCGCGTGGGCAGCGCGAGCGAGGGTGACCCCCAGACCCGGCGGCTCTGGGAGGAGGAAG
Seq A exon
GTAGGCGGCGGGGGTCCCGGCGGCGGGCGCCGCGGGCGGCCGGAAGGGGCCACGCCCACGGAGCGGGCCGAGCGGGGCGCGCGGGGAAGCGGAGCTTGGAGCTCAGTTTGCCTTCTTCGTGAAATCGCCTGCCTTCTCACACGTACCGGCTCGGGTTGGTTCTGGGGCCGAATTCCCTGGGGGCGTGCTTTGTGCTGGGCGCCCCTGGATGGCCAGCTGCCACTTACTGACAGGAGGGGACCCCTGGACACCTGCACAGGCTCCGTTTCACAGCAGTGTTGGCGAGTTGTGCTCCTTGCCTCTTGGCCCGTAGCTGAGGCTGTTGCTCTTGGAGTGGAGTCTCCCCCGGGTCCCCGCCGGCGGCTCGGAACAGGCCCGCCGGGTGTTTCCTCTGAAGGACCCAGGAGGGCGTGGTCAGAACCTCGGCAGGGTCGGTGAGGCCCCGGCCCAGGTCAGAGTGTCATTTGGAAAGTTTTGCGCTGTGGCTCGCAGCCCCAGGCTCAAGTTTGGTTTGCGCTAAAATGAAGGGGTGGTTGTGTGGTGGGTTTCGGGAACCCCCTCATGGTGCCCCCTGCCTCCAG
Seq C2 exon
GTTTCCATCAGATCGCCCTGAACAAGGTGGCCGTGCTCCTGCTGGCTGGCGGGCAGGGCACCCGCCTGGGCGTGACCTACCCCAAGGGCATGTATCAAGTGGGGCTGCCCAGCCAGAAGACCCTGTACCAACTGCAGGCAGAACGGATTCGGCGGGTGGAGCAGTTGGCCGGCGAGCGCTACGGGACCCGCTGCACTGTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054:ENSBTAT00000065653:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PU(3.7=13.6)
A:
NA
C2:
PF0170413=UDPGP=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCCTGCGCTTCTGC
R:
CAGCCCCACTTGATACATGCC
Band lengths:
345-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development