HsaINT0175985 @ hg19
Intron Retention
Gene
ENSG00000197355 | UAP1L1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:HGNC Symbol;Acc:28082]
Coordinates
chr9:139971953-139972706:+
Coord C1 exon
chr9:139971953-139972273
Coord A exon
chr9:139972274-139972501
Coord C2 exon
chr9:139972502-139972706
Length
228 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CACGGCGCCCGTACCCCCAGGTT
3' ss Score
8.15
Exon sequences
Seq C1 exon
CGAGTGCCGACTTGACAGACGGCAGCGGCGACATGGCTTCGGAGCAGGACGTGCGCGCCCGGCTGCAGCGCGCTGGCCAGGAGCACCTCCTGCGCTTCTGGGCCGAGCTGGCGCCGGAGCCACGAGCCGCGCTGCTGGCGGAGCTGGCGCTGCTGGAGCCCGAGGCGCTGCGCGAGCACTGCCGGCGGGCGGCGGAGGCCTGCGCGCGCCCCCACGGCCCGCCGCCCGACTTGGCCGCGCGCCTGCGGCCCCTGCCCCCAGAGCGCGTGGGCAGGGCCAGCCGCAGCGACCCCGAGACACGGCGGCGCTGGGAGGAGGAAG
Seq A exon
GTAAGCGGGGTGGGAGGCCCTGGGGGCCGGCAGGGGGTCGTGCCCACGGAGCGGGTGGGAACCGAGGCCGCGCTCGGGGAACTGTAGTTCTCCTCGCTACTTTGAGACGTGTCTCGCCTCACGCGTTCCGGCCCCCGAGTCCTGGCGCCCCAGCCCCAGAGTTGGTTTCCCCTAAAGCGGAAGGGTGGGCGGGTCCCGGGCGTCCCTTCACGGCGCCCGTACCCCCAG
Seq C2 exon
GTTTCCGTCAGATTTCTCTGAACAAGGTGGCCGTCCTGCTGCTGGCTGGGGGGCAGGGCACTCGCCTGGGCGTGACCTACCCCAAGGGTATGTACCGTGTGGGGCTGCCCAGCCGGAAGACCCTGTACCAGCTGCAGGCGGAGCGGATTCGGCGGGTGGAGCAGCTGGCCGGTGAGCGCCACGGGACCCGCTGCACCGTCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197355-UAP1L1:NM_207309:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PU(4.2=16.5)
A:
NA
C2:
PF0170413=UDPGP=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCAGGAGCACCTC
R:
ACGGCCACCTTGTTCAGAGAA
Band lengths:
284-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)