BtaINT0155874 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106157586-106158386:-
Coord C1 exon
chr11:106158201-106158386
Coord A exon
chr11:106157653-106158200
Coord C2 exon
chr11:106157586-106157652
Length
548 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGAAGAGTGCACCCCCCAGCCT
3' ss Score
-3.7
Exon sequences
Seq C1 exon
GAACTTCATGGCCTTCCAAGTGCTGCGGGAGGAGGAGTTCTCCCCACTCAAGAACGCTGACTCAGCCGACAGGGACAACCCCTCCACGTCCCGGCGGGCCCTGCTTGCCCAGCACTGCCGGTGGGCCCTGCGGGCAGGCGCCCGCTTCCTGGACGTGCACGGGGCCCAGCTCCCCGAGCAGCTCAG
Seq A exon
GTGAGTGTGGGCAGCGGGGTGTGGCCCGAAGGACAGTGATGTCAGGGTGTCACAGCCCAAGCCGCACTGCAGGGCCCTGCTGTCATGGCTGCTGAGCTGGGGTGGGGGCTTCTGCCCTGGCACCACACTGAATGCAGGTGGCCGTGTGCCCGGTCCTCGAGGTTGCTCAGGGCCCCGGGCACGTGAGGGCCGCATCTTCCCAGGCGGGGCACCCAGAAAGCAGCAGGCAGGTCACTTTCTAGGGTGGGGAAAGAATAGGAACTTAGGTTCCACCCCACTGCCCACAGCCACCTCCTGAATCTGGCTATCCAGGCTGTGAGATGCCTGCAGAGGGCAAGGAGCATTTTCCAGACCAAGTCAGGGCCTGTCGTTCTGGGGTGGTGTCCGGGGCTGCGTGTTCAGAGGAAGAGGAGATTGCCTGGAGGAGGGCTGCGGGTGTGGGGGATGGTCCGCTGGGTGGGCAGGGGCTGGCCGGCTTCCTGGTGGGTGGGGCCAGGGAGGGCGCTGGGACAGGACCCTGAACTGATCCTGAAGAGTGCACCCCCCAG
Seq C2 exon
CCTGCCTGGCAGCGCAGAGCCTCCAGCCATCTGTGAGATCTCCCCCTTGGTGTCATACGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054:ENSBTAT00000065653:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(16.5=100)
A:
NA
C2:
PF0170413=UDPGP=PD(0.5=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAAGTGCTGCGGGAG
R:
CTCCAGCGTATGACACCAAGG
Band lengths:
239-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development