GgaINT0125122 @ galGal3
Intron Retention
Gene
ENSGALG00000009090 | UAP1L1
Description
NA
Coordinates
chr17:736482-737478:-
Coord C1 exon
chr17:737293-737478
Coord A exon
chr17:736549-737292
Coord C2 exon
chr17:736482-736548
Length
744 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
CCCAGTGTTCTCTTGTTCAGTCT
3' ss Score
6.89
Exon sequences
Seq C1 exon
GAATTTTGTGGCATTTGAAGTTTTGAGAGAAGAGGAATTCTCGCCATTGAAAAATGCAGACACAGCTGAGACAGACAACCCTACCACTGCTCGGCAGTCCCTCCTGGCCCAGCACTACCGCTGGGCTCTCAAGGCTGGGGCCAGATTTCTGGATGAAGATGGCTGCAGGATACCAGAGAAGCTCAG
Seq A exon
GTGTGAACCTCAGTGATGTTCTCTGCAGCTTCTTTGCCCGTGGCTTCCCAAGCCTGATGGCTGGCTGGTGGCGTGCACGCTGTGCTCTACAAAACAGAGCATTTGTCCAATCACTTGTATGAGTTCTGTTCACCTGGCCTTTTCCAAACATCCTCTTACATCTGCTACTGCTCCATTAGTGTTGTGAGTACTTCAGACACTAATGCACAGTACCCTTTGCTTTTACTCTGGCAGAGATTCCTGCCTTGGGGGTCACAAGTCGGCTCCTCCTATAGCAACTTCAACACAATAAGACAACTGCCTTAGATAGAAGCGGATTTTTCTATCACTCAGGATGTAACCAGCCCAAGGAGCTGTAATTTGTAGTCATCCTTGCCTCTTCTGATTATGGTCCCAGTTTTTAAAGCCCAGCAAGAGTCTCAGATGTACAGCAATTACCAGTTCAGATACTTCCTACAGCTATGTAAAGCTACTTTTACTACATGGGACAATTACTTCATCAACTGACAGTTTAATAAACCCAGAAGTTGTTTGTTTTATTTGAAAAGCACCTTTTAAAATGTCATGTAATTGTTTTGATGAGAACCTGCTAATTCCCTTTCATAGTTTATATTCAAGTGATACCTGATGCATGTGAATGTAACAAACTTATCCTTCTGGATGTCTGACTCTTGACAAACCTTCAGAGACAACACACTGTTCTGTAAGCATAGCAAGAAGTTAACCCAGTGTTCTCTTGTTCAG
Seq C2 exon
TCTTTCAGGAACCGAAGATCCTCCGGCTGTGTGTGAGATTTCTCCATTAGTATCTTACTTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090:ENSGALT00000034191:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.7=100)
A:
NA
C2:
PF0170413=UDPGP=PD(1.0=17.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTGGCATTTGAAGTTTTGAGA
R:
AGATACTAATGGAGAAATCTCACACA
Band lengths:
238-982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]