BtaINT0155880 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90840122-90840718:+
Coord C1 exon
chrX:90840122-90840202
Coord A exon
chrX:90840203-90840562
Coord C2 exon
chrX:90840563-90840718
Length
360 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTTCTTGGTTGTCTTCTAGGTG
3' ss Score
11.67
Exon sequences
Seq C1 exon
CGCCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTGCAGGAGAGGTTGGGCAAGCAGAAGTACTTCCTG
Seq A exon
GTGAGTGATCTGCTGGGACACCTGCTTCCTTCATATCCCCTGGCCTCTGGCTACCTGTTTATGGGGTCTCTTGCCACCTGAGGGAGTGTCTTTTGGTTCTTGTATCTGTATCACATGACTTGTGCCCCCTTTTTTTTTTTTTATCTTGGGAAAGCCTAGTATGTCCTTCTGTTTCCCCCATCTGTGCCTCTGCCCTCAGATGACTAGGTTATTTTCACAGTCGTGGCACTTAAAGATGTGGCACTAGACACCCCTCTTGCTGTTTTCTGGGGAGTGAGAGTATAGAGTGATGAGTGACTTCATGCTGACCTGCATCACCCTGACCCAGACTCTCTGTGTCTTTTCTTGGTTGTCTTCTAG
Seq C2 exon
GTGGGCGCAGGGGCCATTGGCTGTGAACTGCTCAAGAACTTTGCCATGATTGGGCTGGGCTGTGCAGAAGATGGAGAAATTGTTGTCACAGACATGGACACCATTGAGAAGTCAAATTTGAACAGACAGTTTCTGTTCCGGCCCTGGGATGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
NA
C2:
PF0089916=ThiF=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGAACCGTTATGATGGG
R:
AGTGACATCCCAGGGCCG
Band lengths:
237-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]