RnoINT0158922 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1732722-1733065:-
Coord C1 exon
chrX:1732985-1733065
Coord A exon
chrX:1732878-1732984
Coord C2 exon
chrX:1732722-1732877
Length
107 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTTCTTGGTCGTTTCTTAGGTG
3' ss Score
9.23
Exon sequences
Seq C1 exon
CGTCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTTCAAGAGAAGCTGGGCAAGCAAAAGTACTTCCTG
Seq A exon
GTGAGTGGTCTCCTTGGACACCCTGCGTGGTCACCTCCCTTGATCTCTGGCCACCCCTTCTGGGATCATCTGACTTGCTATTGTATCTCTTCTTGGTCGTTTCTTAG
Seq C2 exon
GTGGGTGCAGGGGCCATTGGCTGTGAATTGCTCAAGAACTTTGCCATGATTGGGTTAGGCTGTGGAGAGGGTGGAGAGGTCGTGGTCACAGACATGGACACCATTGAGAAATCGAATCTGAACCGACAGTTTCTTTTCCGGCCCTGGGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
NA
C2:
PF0089916=ThiF=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGAACCGTTATGATGGGC
R:
GACATCCCAGGGCCGGAAAA
Band lengths:
234-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]