BtaINT0155881 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90840563-90842525:+
Coord C1 exon
chrX:90840563-90840718
Coord A exon
chrX:90840719-90842359
Coord C2 exon
chrX:90842360-90842525
Length
1641 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCCACTCTCACCTCCCCTAGAAA
3' ss Score
8.72
Exon sequences
Seq C1 exon
GTGGGCGCAGGGGCCATTGGCTGTGAACTGCTCAAGAACTTTGCCATGATTGGGCTGGGCTGTGCAGAAGATGGAGAAATTGTTGTCACAGACATGGACACCATTGAGAAGTCAAATTTGAACAGACAGTTTCTGTTCCGGCCCTGGGATGTCACT
Seq A exon
GTGAGTGTGATGGGGGATGGAGGTGGTACTTTGTCATCTTGTTTTTCTCTTGTCTTTTGTTCCCATTCTTCCTAGAAAGGGGGCTTTACTGCCTTTTTCTTTGCTTCAGCTCTCCCTCAGTTTCTGTCACTCGTTCACTGAACGCTGAGTACCCTTCCATTGAATCCACCGTTTTTCATCTCCTGTTTTCTTTTCCCTTGACCTCTTATGAATGCTGGTTGGGACAGTGTGTTGGGGGTCCCAAGTTCAGTGATTCACTAGGGGGACTCACAGGACTCAGCATATAGTCATACTCAGGGCTATGATTTCTTCCAGTGAAAGAATGCATAACAAAATCAGCAAAGAGAAGCTGGCTCATGGGGTGAAGTCTGGGGGAGACCAAGCACAAGTTTCCAAGACTGTCTCCCAGTGGAGTTGCACAGGACACCTGTAATTCCCCTAGTAGCGAATTGTAACAACACATATGAAATGTTGCCAGTCAGGGAAGCTTGTAAGAGACCTAGTACCCAAGGATTTTACTGTGGGCTGGTCATGTAGGCGCCCTCTTCTGGGAACATCCCCAAATTCCAGACTCCTAGAAGGAGAGCAGGAGTTTGGCCTAAGCCATAGGATTTGCATAAGCAGCCTAGGCACAGTGAGCAGCCTTTACTAGGTGGAGAATGGCAAGAACTCGCTTGAAATCCAGGTTTCCAGACTGCAGCCAAGGCCCAACCTGGCCAGGAGGCCTCTCCTAGGAGAGCACTTGTGCTAGGTTCACTGTTCTCTGCACAGATAGAAGCTAGGTTATACGGGGATCTAGCTAGTAAGCCTTGTGTGGGGAACAGCATCATTGCCTGGCCAGGATCGACTCCCCTTTTGTTCATTCATTTATTCACCAAGTAATTATCCAGGTAGGTGCTCTTGTAGGTACTTGCAGTACACCAAGGAAACAAAGATTTGGTGGGGTGGGGACAGAGTAAAGAATAAACACAGTACAATAATAAAGTTTATACTCAGCGTTCTTGGTAAGTGCTGTATAGAGGAAAGAGCAACAGCAAGATGAGGGAAGTGGGCAGGCCAGGGAGATCAGTTTGCAATTTTGATATGTGGAAGGGCTCATCTCTGCCGACTTGGAGGGCGTGAGGAAGTAGAGTTCCTCAACCACTCAGGCCAAGATCCTGAGGTGGGAGGGGAGTCGGAGATAAGCTGGAGGAAATGGGGACCAAGTCATCTTACCTTCAGTGGAGGCAGGAGCAAGGGAGGGTTTTCAGCAGAGGAAGGATATGGCCTGACTCAAACTTCTTGTCTGTATGCTAAGATTGTTTTGTTTGGGGGAAATGTTCCCCAGCCTAGGTGCCATTACCTGAAAGAACAGTGGATGTTGGGTAGGCAGAAGAACAGAAGGCTGGCCTGTTGTCTCCAATCTTTGCCTGTCCACTGCTTCCTTCCACCGAACCCCTGGCATTTCTGTCCCTGCCCTAGCCCTGTGGTTCTGTCATGAACTGTCTCCTGCCAAACCAGAGAGCTTCCTGAACTCAGGGCCTAGTTCTTCGCAGCATTAAATATGTCAACCTTCAGGAGGACAGCTCTGTAGGGGTTCTCTGGCTGCACACATGAATAACTGAGTTTTGTTCCCCCATTCCCCACTCTCACCTCCCCTAG
Seq C2 exon
AAATTAAAGTCTGACACAGCTGCTGCAGCTGTGCGCCAGATGAATCCTCATATCCGAGTGACAAGCCACCAGAACCGTGTAGGTCCTGACACTGAGCGCATCTATGATGATGATTTCTTCCAAAACCTGGATGGTGTAACCAATGCCCTGGATAATGTGGATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(35.2=100)
A:
NA
C2:
PF0089916=ThiF=FE(37.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGGCTGTGAACTGCTC
R:
GGGCATCCACATTATCCAGGG
Band lengths:
310-1951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]