RnoINT0158923 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1730122-1732877:-
Coord C1 exon
chrX:1732722-1732877
Coord A exon
chrX:1730288-1732721
Coord C2 exon
chrX:1730122-1730287
Length
2434 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TGCATCTCCTCATTTCACAGAAG
3' ss Score
8.45
Exon sequences
Seq C1 exon
GTGGGTGCAGGGGCCATTGGCTGTGAATTGCTCAAGAACTTTGCCATGATTGGGTTAGGCTGTGGAGAGGGTGGAGAGGTCGTGGTCACAGACATGGACACCATTGAGAAATCGAATCTGAACCGACAGTTTCTTTTCCGGCCCTGGGATGTCACG
Seq A exon
GTGAGAAGGATGGGAGTAGGAGATGGCTCTCTGACCTCTTGTTTTCCTATCTTTTTCTTACCTATATCTATGGTATTTCTAGTAGAGATATACTTATCTTTCCTTGGGCCCTTCTCATCCTCTGTTCTGTCATTCATTCAGCTCTACCTTGAATCAGGTCTTTTCATCTCTTTTTCTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTTCATCTCTTTTTCTGAACAACCGTCAAGTCGGTTTATTTCTTTTTCTTTTTCAGTACTGGGGGGTGAATCTAGAGCTATCTAGCATGCTGCATAGCTAGCTATAACGACTGCCACTGAGCTGCCTTTTCATTTCATTTATTGTACATCTTTTTTCCCCATTAATTTATTTATTCACTTTACATCTCAATCATAGTCCACCCTCCCCCGACATATGCAACAGCAGTGCAGCTTGGTCTTCATGCAGGTCCCTCAACAACTGTGGCACATCTTTAACCCCAGCACTCATGTATATATGAGGGCCTACATGTATGTATGTCTACTGTGTATATGCCTAGTGCCTGTAGAGACTGGAAGAGTATGTTGGGTCCTCTGGAATTGTAATTCTGGGGTTATAAGTGGGTTGTGAGCCACCAGATGTGCTGAGAACCAAAACTTAGTCCTCTGGAAGACCAACAAGTCCTCTGGAATACCAACAAGTGCTCTTAACTGCTGAGCCATCGGTCTAGCCCTTATCACTGCTGCTTTGGGACAGTTGTCTTGTGGGTTTCCAAAAATATCCCCAAACTCGGTGACTGCCTAGGAGGACTAGTGGGTGATTTATTGCAGAAAAGGAACACAGCACAATCAACAAGGGAGGAACGAAGTCAGCAGCAAGTATTTTAAGAGTTATCTCCCAGTGGGGTTGCAGAAGGTGGATTTACCCGGTAACAAATATAATAATTCTCCTGAAAAGTTTCTAGCTAGAGAAGCCTGTTCATCTGTAACTAGGACATTTACTGGGATTTGGTTGTGTGTCAGAATTCCTGAATCTAGAGGGAAAGAAGGTGCTTAAACAAACTACACTGTTCACACAAACAGTTCTAGCACACTGAGCCATTAGTATTAGGTGGGGTAGTGATGAGGACTTTCCCTAAAATCTAAGTTCCTAGACTCCAGCCCAGGGCCACTTTTAGAAACAGGCCTCTGAAGGATGACATTGTAGTCAGCCAAGTGACTCTTGAGTTTGAAGCTGCGGTACCATATGAGGCTTTCTGTAAGCCAGTATTTGTTACTCACTGAATAGTAACTTTAGGAGTTAGGGTTTTAGATCCTTGAGCTATAATAAAGAATAAAATAAGGCAAGACAGGGTTCATATCTTTCTTTTCAGTGCTTGAGAGGCAAATAGATCTGAGTTCAAGGACAGCCAGGTCTACAAGGAAACCCTGTCTCAAAAAATAAAAATGAAAACGAAAAAAGGTTCTAACCGAGGAAGGTAAAAAATAAGGACAGATACATTATTTTTTTTAAGATTTATTCATTTATTATATATAAGTACACTGTAACTGTCTTCAGATACACCAGAAGAGGACATCGGATCTCTTTACAGATGGTGAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAACCGGGTGCTCTTAACCGCTGAGCCCTCTCTCCAGCCCCAGATACATTATTGATACACCCAGGAGGCAGAGGCAGGCAGAGTTTGAGGCCAATCTGGTCTACATAGTAATTTCCATGACAGAGCTACATAGATAGAACCTGTCTCAAAACAATGAAGAAACCGTATAGATAAAATATAACAGTAACATACAGGGTCAATGTTGGCACTTGGCAAAGGGTAAAGGAGTAAGTTGCCCTTGGGAGTGGGGTAGTTTGCTGATTTCATTCTGCTCCTTAAGGAAGGTATCATTTCCACTCTGAGAAGTCCTGGGCAGCAGTTCACTTTACCCTAAGTGGGGATAAGAGCCAGGGAAAGGTTCTAAGCATAGGAGGGATATGACCTGACTTTGCTTTCATAACACTTACACTTATTTGTTGTTGAACCATCTGATTCTGTTTGGGGAAATCTAACTTGCAGTGCTACTCTCTAAAAGAACAGTAGGCTAAAAACCAGGTGGCTAGTCCATTGTCCACAATACTGTCCTGTCTTCTGCTTTCTTTTCCATCTCATTGTCACCATCTTTTCCATTTCAGCCCTGGCCATGTAGCATTATTTAGAATATTTTGCTAAGCCAGGGAGCCTCCTGAACTCAGGGCCTGGTTCTTCTAGCATTAGATGAATGCTCAGGGGGACAGTTCTCTTTGATGTTGAGTGAATACATCCACGTTCTACCCTCAAATGCATCTCCTCATTTCACAG
Seq C2 exon
AAGTTAAAGTCTGACACGGCCGCTGCAGCTGTGCGACAGATGAATCCTTACATCCAGGTGACAAGCCACCAGAACCGTGTAGGCCCTGACACGGAGCGCATCTATGATGATGATTTTTTCCAAAATTTGGATGGTGTGGCCAATGCACTGGACAATGTAGATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(35.2=100)
A:
NA
C2:
PF0089916=ThiF=FE(37.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]