BtaINT0155889 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90847892-90848361:+
Coord C1 exon
chrX:90847892-90847980
Coord A exon
chrX:90847981-90848268
Coord C2 exon
chrX:90848269-90848361
Length
288 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
TAACCTCTCACTCCTAAAAGGAT
3' ss Score
7.05
Exon sequences
Seq C1 exon
ATGACAGCCGTCTGGAAGAGCTCAAGGCTACACTGCCCAGTCCCGAAAAGCTCCCTGGGTTCAAGATGTACCCTATCGACTTTGAGAAG
Seq A exon
GTGCTGGCTGGGGGCCCCAGCAGGCAGTGGGGATGGGATAAACATAGGTGGGATGGACAGAACAGGCTTCTGGGGATCGGGAGGCAGCCCCAGGCCTTTGTGGGATTGGATCATGGGCCTGCTAGGCGGCCCTGAATGAATAGATGTTCCCAGCCATGCCTTTGTGATCTGAGAGCCCAGCAGGTAATTGCAGTGGATACTTGTGCCCCTAGAGGCCAGGAATCTTCTTCCTCTGATTCTCTCCTATTGTCTGCCTACCCTCCTCCCTTAACCTCTCACTCCTAAAAG
Seq C2 exon
GATGATGACACCAACTTCCATATGGATTTCATCGTGGCCGCATCCAACCTCCGGGCAGAGAACTATGACATTCCCCCTGCAGACCGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(4.3=10.0)
A:
NA
C2:
PF0213416=UBACT=FE(43.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCCGTCTGGAAGAGC
R:
CTTGTGCCGGTCTGCAGG
Band lengths:
182-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]