MmuINT0168778 @ mm9
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20257909-20258326:+
Coord C1 exon
chrX:20257909-20257997
Coord A exon
chrX:20257998-20258233
Coord C2 exon
chrX:20258234-20258326
Length
236 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
3' ss Seq
GATCTACTACTCTTATTCAGGAT
3' ss Score
7.37
Exon sequences
Seq C1 exon
ATGACAGCCGTCTTGAGGAGCTCAAAGCCACATTGCCCAGCCCAGACAAGTTACCCGGATTTAAGATGTACCCCATTGATTTTGAGAAG
Seq A exon
GTGCTTGGCAGGGGCCCTGGATGGGACAGTTGGGGTGAGCTAAGCACAGACGGGGTTGTAAGGAATGGGGATCTAGGACTATGGAGCCAGTCTAAGCCTTTACAGTGATCAGATCATGGACTGCCACATAGCTTTCCTTCTGATCTGGGACAGACCAGCAGGTAATTAGCATTGGAGGATAGTTATATCCCAAGAGTCCAGAAAATTTTCTCATCTGATCTACTACTCTTATTCAG
Seq C2 exon
GATGATGACAGCAATTTCCACATGGATTTCATTGTGGCTGCATCCAATCTTCGGGCCGAAAACTATGATATTTCCCCTGCAGACCGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-Uba1:NM_001136085:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(4.3=10.0)
A:
NA
C2:
PF0213416=UBACT=FE(43.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCCGTCTTGAGGAGC
R:
CTTGTGTCGGTCTGCAGGG
Band lengths:
182-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: