BtaINT0155894 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90836458-90836785:+
Coord C1 exon
chrX:90836458-90836516
Coord A exon
chrX:90836517-90836616
Coord C2 exon
chrX:90836617-90836785
Length
100 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GACACCCTCTAACCCGGCAGGTA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GGAATGGCGAAAAATGTCAGTGACGCAGACATAGATGAAGGCCTTTACTCCCGGCAGCT
Seq A exon
GTGAGTGGGGCCGAAGTTGGACTGTGAGGTGGGAGGGGGCTCTGAATGGATAGGGTCAGGAGGGCGTGACTCTGACCTGTGACACCCTCTAACCCGGCAG
Seq C2 exon
GTATGTGTTGGGCCATGAGGCAATGAAGCGGCTCCAGACCTCCAGCGTACTGGTATCAGGCCTTCGGGGCCTGGGCGTGGAGATTGCCAAGAACATCATCCTCGGTGGGGTCAAGGCTGTCACACTGCATGACCAGGGCACTGCCCAGTGGGCCGACCTCTCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(33.3=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCGAAAAATGTCAGTGACG
R:
CTGGGAGGAGAGGTCGGC
Band lengths:
226-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]