DreINT0170310 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20722336-20722664:+
Coord C1 exon
chr23:20722336-20722394
Coord A exon
chr23:20722395-20722495
Coord C2 exon
chr23:20722496-20722664
Length
101 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATTTAGTATACGTTTCTCAGGTA
3' ss Score
3.26
Exon sequences
Seq C1 exon
GGCATGGCTAAGAATGGAAATGATGCTGAGATCGACGAGGGCCTGTACTCCAGACAGCT
Seq A exon
GTGAGTCTGGCCTGCATTTTAGTTTGATGTATCATAATGTTTTTTTGAGCAAGCAAACCTGATCATGTGAGCAGAAGCTAAATTTAGTATACGTTTCTCAG
Seq C2 exon
GTACGTGCTGGGTCATGATGCTATGAAGCGTATGCAGAGCTCTAATGTTCTTATCTCGGGACTGCGAGGTTTAGGGGTAGAGATCGCTAAGAATGTCATTCTGGGTGGAGTCAAAAGCGTCACCCTGCACGATCAGGGAGTGGCCGAGTGGAAGGACCTTTCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(33.3=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGCTAAGAATGGAAATGA
R:
GTGATGAAAGGTCCTTCCACTCG
Band lengths:
226-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]