BtaINT0155895 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90836617-90837008:+
Coord C1 exon
chrX:90836617-90836785
Coord A exon
chrX:90836786-90836873
Coord C2 exon
chrX:90836874-90837008
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCCT
5' ss Score
0.18
3' ss Seq
TCCTACACTCTCCTTTGCAGTTC
3' ss Score
9.15
Exon sequences
Seq C1 exon
GTATGTGTTGGGCCATGAGGCAATGAAGCGGCTCCAGACCTCCAGCGTACTGGTATCAGGCCTTCGGGGCCTGGGCGTGGAGATTGCCAAGAACATCATCCTCGGTGGGGTCAAGGCTGTCACACTGCATGACCAGGGCACTGCCCAGTGGGCCGACCTCTCCTCCCAG
Seq A exon
GTTCCTCTTTCCATCCCCCTTCTTTGCCAAGGCCCCAGCCCTCTGGGCTACACAGCCAGTTCACTTCTTCCTACACTCTCCTTTGCAG
Seq C2 exon
TTCTACCTGCGGGAAGAAGACATAGGAAAAAACCGAGCTGAGGTCTCCCAGCCCCGTCTCGCTGAGCTCAACAGCTATGTGCCTGTCAGTGCCTACACCGGGCCCCTTGTGGAGGACTTTCTCAGTGACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGGAGATTGCCAAGAACA
R:
ACAGGCACATAGCTGTTGAGC
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]