RnoINT0158937 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1736314-1736704:-
Coord C1 exon
chrX:1736536-1736704
Coord A exon
chrX:1736449-1736535
Coord C2 exon
chrX:1736314-1736448
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
CACCCACCTGTCTCTTACAGTTT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GTACGTTTTGGGCCATGAGGCAATGAAAATGCTCCAGACATCCAGTGTCCTCGTCTCAGGCTTGCGGGGCTTAGGTGTCGAGATTGCTAAGAACATCATCCTTGGTGGGGTCAAGGCTGTCACCCTACATGACCAAGGCACTACACAGTGGGCTGATCTCTCCTCCCAG
Seq A exon
GTATCTCTTCCCAACATCCTTTTCCCTGCTGAGATACCTACTTCTTTGTGCCACAGCCTAATCCTCCCACCCACCTGTCTCTTACAG
Seq C2 exon
TTTTACCTTCGGGAGGAGGACATTGGTAAAAATCGAGCTGAGGTATCCCAGCCCCGACTTGCTGAACTCAACAGCTATGTACCTGTTACTGCCTACACTGGGCCTCTTGTTGAAGACTTCCTTAGTGGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTAGGTGTCGAGATTGC
R:
TGTTGAGTTCAGCAAGTCGGG
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]