BtaINT0155898 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90838305-90838635:+
Coord C1 exon
chrX:90838305-90838395
Coord A exon
chrX:90838396-90838502
Coord C2 exon
chrX:90838503-90838635
Length
107 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGTACTCCTCCTTCAACCAGGAC
3' ss Score
7.27
Exon sequences
Seq C1 exon
GCAGCTCTTCTGTGATTTTGGAGAGGAAATGATCCTCACTGATTCCAATGGGGAGCAGCCGCTCAGTGCTATGGTTTCTATGGTCACCAAG
Seq A exon
GTGAGGAGGCCAGCCTTGGGTCCTGGCAGGCGGATGGGCGGTCACAGGCCTTCCTGTCTACTCCCAGTACCCTGAGCCTGCCTCTGAGGTACTCCTCCTTCAACCAG
Seq C2 exon
GACAACCCCGGTGTTGTTACTTGTCTGGATGAGGCCCGACATGGCTTTGAGAGTGGTGACTTCGTCTCCTTTTCGGAAGTACAGGGCATGATTGAACTCAATGGAAGTCAGCCCATGGAAATCAAAGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(4.5=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCTTCTGTGATTTTGGA
R:
ACTTTGATTTCCATGGGCTGACT
Band lengths:
219-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]