RnoINT0158940 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1734628-1734957:-
Coord C1 exon
chrX:1734867-1734957
Coord A exon
chrX:1734761-1734866
Coord C2 exon
chrX:1734628-1734760
Length
106 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCTCACTCCTTTTCAACCAGGAC
3' ss Score
7.29
Exon sequences
Seq C1 exon
GCAACTTTTCTGTGATTTTGGAGAGGAAATGGTTCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCAATGGTCACCAAG
Seq A exon
GTAAGGAAATCAGCCCCAGGGGTCTTGGCAAACAGCTAGGCAACAGCAACCTTCTCTGTACTCTTGTACCTTGACTTGCCTCTGAGGCTCACTCCTTTTCAACCAG
Seq C2 exon
GACAACCCCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATGGCTTTGAGACTGGTGACTTCGTCTCATTCTCAGAAGTACAGGGCATGGTCCAACTCAATGGATGTCAGCCCATAGAGATCAAAGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(4.5=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTTTTCTGTGATTTTGGAGAGG
R:
CCAGCACTTTGATCTCTATGGGC
Band lengths:
224-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]