BtaINT0159528 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039160 | VAV1
Description
vav 1 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12657]
Coordinates
chr7:18868528-18870796:-
Coord C1 exon
chr7:18870682-18870796
Coord A exon
chr7:18868680-18870681
Coord C2 exon
chr7:18868528-18868679
Length
2002 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GTCTGCTCTCTGCCGTACAGCCG
3' ss Score
6.72
Exon sequences
Seq C1 exon
GAGCTGGTGGAATTCTACCAACAGAACTCTCTGAAGGATTGCTTCAAGTCGCTGGACACCACCCTGCAGTTCCCCTTCAAGGAGCCTGAGAGGAGAGCCATCAACAAACCATCAG
Seq A exon
GTAGGAGGCCTCCAGATGGGGGCCTGTAGTGCCAGCTCCTTTCTGTAGTGCAGGGAACGCTGGGGGATGCTGAAGACATTGCTTCCAGTGGGCATGGAGAAGTCCTATCTGTGAAAGAGCCTGAACTTCCCACTTCCAGTTTGTCCCTTTGCTCCTGAGAGATCTGCATATCCATTTGCTTGGATGAAAGGGGTTACTTTCATATTTGGGAAAATGAGGATACAAGAAACCAGAAGGGTGCTCATCTATATATTTTAAGCCTTTAATTTTGTATTAAATCAGGCATTAATCAGTATCGATAACCTTCTCCTGGGCTTCCCTGGTGGCTCAGATTGTAAAGAATCTGCCTGCAATTCAGGAGACCCAGGTTCCAACCCTGGGTCGGGAAGAGCCTCTGGAGAAGGGAATGGCTACCCACTCTAGTGTTCTTTTTGGGATAATCCCATGGATAGAGGAACCTGGCGGGCTACAGTCCATGGGGTCATAGAGAGTTAGACACGACTGAGTGACTAAAACAGCAATAAACTTTCTCCCACAGAAAGGCAAGATCTTTAGCATTCTCTTCTGTTTTCCTTTGTATAGCTTACTAACCTGGTTTGTTGAAATTTTCTGGAGTGTTGGCTGTGATTTTCTGTGAGTGAAAACAATCATGCCTTACATTTTAGGAATTCTTTCTTCACCATTGCATTTCAATTTGCAAAGTTGTTATCAAGCATTGTTTAAACTGTCTACATTTCTTATTTTCCATGTTTTCCTTTATTTTTAAAATTCCTTATTCTAATTCAAATTTTATTTTGCTGGAGTGCATTCTGGAGTATGTTTAGTGGAAAAGTCACATGGGTGGTGGAGTTTCTGAACTCTTACCTATCCAAAAAAATTTTAAGATGGATTTAAAAATTAATTATTGTTCAAATGTTTGCCTATAAAATAACAGTTCCCCACTGGAAAAAGCTGTATTTTTGAGAAAGCAACACCAGCACAACATCGGGACTCTAAGATGAAAATTGTCCTTATTCTCATCACCGAATCAGATGTTTCTGTCTGCACATTTCTTCCTGGAAAATATATTCAGTCAGCCTATCTGCAGAAATACTACAAACTAATTTTCTACAATATCACTTAATATTGTACTTTGAGAAGTTTTCCTGTGTCCCTTTCCCCCTTGCTTATCTTTCTCTCTCTTTTTCTTTTCTTGTTTCTAAAAAAAAAAAAATTCTGTTTGTTTATTTATTTGGCTGTGCTGGGTCTTAGTTCGGCACCCGGGATCTTCCTTCTTCATTGTGACATCCAGGATCTTTTTAGTTGTGACATGGGGGACCTTGAGGTGTGGTGTGTGGACACTTAATTGTGACATGTGGGACCCAGTTCCCTGCCCAAGGATTGAACCTGGGCCCCCTGCATTGGGAGCACAGAATCTTAGCCACTGGGTCACCAAAGGAAGCCCCTCTCCTTCTCTTTTTTAACTCTTAGACCTCCTTCATATAATTAATATTATCTGGAATGAAAATTTCCACATCTTTCTTCTGTTTCTCTTACTATGAATATATGTGTGTGTTTGTTAGTTGCTCAGTCACGTCCAACTCTTTGTGACCCCATGGACTCTAGCTCACCAGGCTCCTCTGTCCGTGGAATTTTCCAGGCAAGAATACTGGAGTGCCTCGCCATTTCCTCCTCCAGGGGATCTTCCCGACCAAGGGTCTCCTGCATCGCAAACAGTTCTTTACCATCTGAGCCACCAGGAAAGCATGAATAGATACAAAACATTTTAAAGATCATATATGGTATTATCCTCTAAATTTGTACCCTGGTTGGGCTGGAAGAATGATCTGGGAAGACAGCTGTCTTCCCTCAGAACACAGGGCGCCTAACACTCAGTGGAAAGAAGCATTGAGGGGTCCTTTATCCCAGCGCATTCTCCTGAGAGCATTGTCCTCTGCAGGTGGTGGGTGGGTGGGAGGGCTCTGCTCCGGGCTGTTTCCCATGTCTGCTCTCTGCCGTACAG
Seq C2 exon
CCGGGAGCATCAAGATCTTTGGCACTGCTAAAGCCCGCTATGACTTCTGCGCCCGGGACCGGTCAGAGCTGTCCCTCAAAGAGGGCGACATCGTCAAGATCCTTAACAAGAAGGGGCAGCAGGGCTGGTGGCGAGGGGAGATCTATGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039160:ENSBTAT00000005560:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.8=12.8)
A:
NA
C2:
PF0001823=SH3_1=PU(85.1=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]