DreINT0173547 @ danRer10
Intron Retention
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:17990090-17993028:-
Coord C1 exon
chr21:17992905-17993028
Coord A exon
chr21:17990245-17992904
Coord C2 exon
chr21:17990090-17990244
Length
2660 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CTTTTGGTTGGCTTGTACAGTAT
3' ss Score
4.19
Exon sequences
Seq C1 exon
GAGCTTGTGGAGTATTATCAGAGTCATTCACTGAAGGAGAGTTTTAAGCTGTTGGACACAACATTACGGTACCCTTACAAATCCCGGGAACGCTCAAGCTCTCGCACCAATACCCGCTCACCAG
Seq A exon
GTAAACACTCCCTGCCATAATCCTCCTCGTTTTTTTATCTGTCACGTTTTTCTTGCTCTCTATTTCTCTTTCTCTCTCTCTCTGTCTTTTCTATTTTCGCCCTTTTGCTTTCTTGCTTTCTCTGGCACACATGTGTTATTGAGCCTCCACCATTCTGGCCAGCAGCTCTTTTGGACACGCTCTCGAGGTCTGAACAAATAAACCCTACCAGCTGGTCCCGCCCTCACATTCAGAAGGCTCCGCCCACTGGTATTTCAGCTGTCAGTCATCTTAGGTTTGGTAGTCACAGGTCCGCCCACTCTGGCTAAGGCTGTGGCCTGACTGAGGCTTTTGGCTTCTGGGGCCAAGTTTTGCTTGGCCAGCTGAATGGGTTCCAATAAACAGATGCTTCATTAGATGTATTATAAATGATGGGCCTTTGTTCCTCTTCGAGTCAAGCTTAACTGGTGCTCACTGGTATTTTTAAGCAAGTGCATAAAGACAGTATAGCTCTGAGTTTGAAAGGTTTAAAGATCCTCTATCTAATCCAAGAGCCACTTAAAGTAGTCATTCATCAAAGATGAAAATCTTGTCATTCACTCTCAGTATAACCTATCTTCTTCCATGAAACAGAAAAGACACAGGACGTTCACTGTATAAAAGTAATGCGAATATAGGATTATGTACAAACATAAAAAGCTTGGGTCTTTTTAGATGTTTTCTCTCTCAAATATTTATCTCACTTTTGCTAATTTATTTAGTAAAATATTGAGTAATATATATATATATATTAGTTTAAAATGGTATTACAATGCTAAATGTGTTTAGTTTTTCCTTTTTAATGTGTCCCACAATCCTACATAAATCATTTCAAGATAATTTGGTGTTCAAAACATTAAAAAATTAATGTTTTTTAAATGTTTTTTGATGAACAAATACTTCAAAAGAACAACAATAATTTTAAATATAAATGCTTTGTAACATTATTTATCTGTTAGTCTTTTAAATATATTTAATTATTAAATATAAGTGAGCACACTACTGTCAGTGAGGGCTGTTTTTTGGATGAGATGTTAAACTGAGGTCCTGACTCTCTGTGGTCATTAAAAATCTCATGGCACTTTTCGTAAAGAGTAGGTGTGTAATGCCGGTGTCCTGGCCAAATTCCTTCAATTGGCCCTTCTCCATCATGGCCTTTCAATCATCTCCATCCACTCAATTGGCTCTATCACTGTCCCTCTACTCCACCAATAGCTGGTGTGTGGTGAGGGCACTTTTACCGTTGTCCTGTGGCTGCCGTCGCATCATCCTAGTAAATGCTGCACACTGGTGGCGGAATGGGGAGAACCCCACCTTGATTTGTATGGCCATACACAATAAAAGCGCTATATAAATACACGTAACATTACATTTCTACTTTTTAAAACTTTTGTGCTGCTTAGTATATATATGGACATCATGATAAATAAATTTAAATGCATTTGATATAATTATATTACCTTTTTGCTTGTATTTCTCACCTATTGCAGGTAATTTTAGCTTTTACATGCAGAGTCGCTCAATTTTAAAGCAAAGATTGTGACCTATAATGACCTGTGATCTATGATAACTTGCATAAAATTATCACGGTGTCACAGTATTGTGGTTACTGCTCTAAATTAAGTTCTTTTAAATGTCTGGGTAAAAAACAACAACTTTTCCCACATTTAACACAATATGTTTTATTTTAATAAACATTTCAAATATTTTGGAGCAGTGGCTTTTGATGTGGAGGCTCCTTTTCTGCTGGAGGTACTGTTGCTCTAAAAACTAAATAAAATAGTCCCACACCAAAAAAAAACTGTACATATACATACGTAAGACCAGTATAACAGAAAATTCTGGTGGTTTTAAACCTTGACTTTTCCAAACCCCGATAAACTTTGAAATCGGTTATCGTCCCATGCCTGGCAGTGGCCCTACAGTATCAGAAGAACTCTGAGGAGGGGCGCACGGTGCAAGCATCTGTATAGTAGCATTATAGTAGTTTTATTTGAATGTAAAATATTGGAGGAGACGATTTGTAAAAGCATTTCTGGGTGCTGCATTCAGTTTAGTTCAGTCCAGTGTGGTTTAAATTTCACTGCTGAAAGTCCAAACACTGAAGAGCAAATCCATCAATGCACACCTTATACACACACACTTTTGCCTTGTCTTAAATTTGATAAAGAAAACATGAAGAAAAACATTACACTGTTGTGCACTGCTCTTTTATTTATTTTTTGTGCTCTCTCTCTCACTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGTCTCAGCAGCCACCTGTGCTTCCTACAACTTCTCCTTCCTTAGTCCTCAGGGCCTCAATTTCTCCTCTCAAAGCTCTGCTCCCTTCTGGTCAGGTACTGCGCTTCTTACATCGTTCATGTTTCCGAATTCCCCTTCATGTCCTCCCATTCTCAACCATCTCGCTTGAGTTTCCAGCATCCATCCATTACAGCTTCAGATATTCATACAATTCCAGTGTAAATGGCCTATTAGTAGAGCAGTTTTCACAAGCTTTCAGTCATTACAGTTCATCTCACTCACAGTGTCATAATGTGTCCACTCATCTGCTAATGATGCTCCTCCGTGTTTAATGCGCTAATCTGGGGCTTTTGGTTGGCTTGTACAG
Seq C2 exon
TATTCACACCCAGGGTAGTCAGCACAGCTGTGGCGCGATACAACTTTGCTGCCCGAGACATGCGAGAGCTGTCACTGCGAGAAGGAGACATCGTCAAGATCTACAGCAAGATTGGGGGAGACCAAGGCTGGTGGAAAGGAGAAGCCAACGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718:ENSDART00000143987:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]