MmuINT0172707 @ mm9
Intron Retention
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27122750-27123757:-
Coord C1 exon
chr2:27123671-27123757
Coord A exon
chr2:27122905-27123670
Coord C2 exon
chr2:27122750-27122904
Length
766 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CACCCTGTCTTCCCCAATAGTGT
3' ss Score
9.2
Exon sequences
Seq C1 exon
CTTCCTGCGCTTCCTACAACTTTTCTTTTCTCAGTCCTCAGGGCCTCAGCTTTGCCCCCCAGGCCCCTTCTGCTCCCTTCTGGTCAG
Seq A exon
GTACCTCTACTGCTCAGGGCCCAGCCTGATGGGTCCCCCTGACTGTGCAGCCTGGTGCTGGGGGGGAGGGGGACGGCTGGGGATCTGGCCAAGGCTGCTGCACATGAGGACGCATTTGGTAGGGCTCATCCCTGGTCACACTGGTGGACACGTCCCTGCCTCATCAGCTTGTCATCCTTCCCGGCCACTGAGAGCTTTGCCTCTGGTTTGGGAGATGGGGTTGGGGGCAGAGCTGGTGACTACTCTGCAGCCAGGAGAGCTGCCATGGGAACAGGAATGGGTGTGGAGGAGAGGGTTTTAGTCATCCCTGGTCTGACGTGCTTTCTGCTGCCAGAGCCAAAGCCCTTCTGTGTGAGGCCATGTGTCCCCTCACTGCCATTGTCACCTGTCCCCAGGACTCCTGGGTTCTGGGCTGAACAAGTCCACTGGGTTGCAATCTAGTTTGGGGACCTGGGGTGGGGATGGTCAAGGCATGGGTGCCTGCTCTGTTCACCAATGGCATGCTTATTGCTTGTGATAGTGGCCCAGCATTGGTGGTGATAGCTCAAACCCCCATTAAGTGCATGCATAGATGTGTCATATGCCCAAATGCAGGTGTGACAGGCCCTCAGCTGGAGGCTAGTGTTCCTCCAGAGACCTTCCTAGCTGTGGGCACAAAGCCGTAGTCTAGGTACCAGGGAAGGGACACAGCTCAGTCTGAGGACCTCTAGCCCTGGCTGGGCAGCTCCTGCAGTTGTTTGATGTCTCACCCTGTCTTCCCCAATAG
Seq C2 exon
TGTTCACACCGCGGGTCATCGGCACAGCCGTGGCCAGGTACAACTTTGCTGCTCGAGACATGCGGGAGCTGTCACTGCGAGAAGGTGATGTGGTGAAGATCTACAGCCGAATTGGTGGGGACCAGGGCTGGTGGAAAGGAGAGACAAATGGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-Vav2:NM_009500:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGCGCTTCCTACAACT
R:
CCGCCCATTTGTCTCTCCTTT
Band lengths:
242-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: