MmuINT0172707 @ mm10
Intron Retention
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27267230-27268237:-
Coord C1 exon
chr2:27268151-27268237
Coord A exon
chr2:27267385-27268150
Coord C2 exon
chr2:27267230-27267384
Length
766 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CACCCTGTCTTCCCCAATAGTGT
3' ss Score
9.2
Exon sequences
Seq C1 exon
CTTCCTGCGCTTCCTACAACTTTTCTTTTCTCAGTCCTCAGGGCCTCAGCTTTGCCCCCCAGGCCCCTTCTGCTCCCTTCTGGTCAG
Seq A exon
GTACCTCTACTGCTCAGGGCCCAGCCTGATGGGTCCCCCTGACTGTGCAGCCTGGTGCTGGGGGGGAGGGGGACGGCTGGGGATCTGGCCAAGGCTGCTGCACATGAGGACGCATTTGGTAGGGCTCATCCCTGGTCACACTGGTGGACACGTCCCTGCCTCATCAGCTTGTCATCCTTCCCGGCCACTGAGAGCTTTGCCTCTGGTTTGGGAGATGGGGTTGGGGGCAGAGCTGGTGACTACTCTGCAGCCAGGAGAGCTGCCATGGGAACAGGAATGGGTGTGGAGGAGAGGGTTTTAGTCATCCCTGGTCTGACGTGCTTTCTGCTGCCAGAGCCAAAGCCCTTCTGTGTGAGGCCATGTGTCCCCTCACTGCCATTGTCACCTGTCCCCAGGACTCCTGGGTTCTGGGCTGAACAAGTCCACTGGGTTGCAATCTAGTTTGGGGACCTGGGGTGGGGATGGTCAAGGCATGGGTGCCTGCTCTGTTCACCAATGGCATGCTTATTGCTTGTGATAGTGGCCCAGCATTGGTGGTGATAGCTCAAACCCCCATTAAGTGCATGCATAGATGTGTCATATGCCCAAATGCAGGTGTGACAGGCCCTCAGCTGGAGGCTAGTGTTCCTCCAGAGACCTTCCTAGCTGTGGGCACAAAGCCGTAGTCTAGGTACCAGGGAAGGGACACAGCTCAGTCTGAGGACCTCTAGCCCTGGCTGGGCAGCTCCTGCAGTTGTTTGATGTCTCACCCTGTCTTCCCCAATAG
Seq C2 exon
TGTTCACACCGCGGGTCATCGGCACAGCCGTGGCCAGGTACAACTTTGCTGCTCGAGACATGCGGGAGCTGTCACTGCGAGAAGGTGATGTGGTGAAGATCTACAGCCGAATTGGTGGGGACCAGGGCTGGTGGAAAGGAGAGACAAATGGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621:ENSMUST00000056176:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGCGCTTCCTACAACT
R:
CCGCCCATTTGTCTCTCCTTT
Band lengths:
242-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types