GgaINT0124888 @ galGal3
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
NA
Coordinates
chr17:7728985-7733490:-
Coord C1 exon
chr17:7733367-7733490
Coord A exon
chr17:7729140-7733366
Coord C2 exon
chr17:7728985-7729139
Length
4227 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTGCTTTGTCCCCCTGCAGTGT
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAGTTGGTGGAGTACTACCAGAACCATTCGCTGAAGGAGAGCTTCAAGCAGCTGGACACGACGCTCAAGTACCCGTACAAGTCACGGGAACGCTCTACCTCCAGGACCTTCACCCGCTCTCCAG
Seq A exon
GTAGGACCCATCTCAGCCTCAGTGCTGCGCTCCCAATGGGAAACCTCACCCGTTCTGTGGGGCGTGGGCTCGGTGTGAATGGGGACCCGCAGCCTCCCGGCAGCTCTTTGCTGCCTTCCCCCCTTGAGCTGCCCTGCCGTGCTCAGCAGAGATTTGCTGAGCGCGAAGAGATGCGTGGCAGCTTTGGTTGGGTGCATTGTGGCTGTCCTGCCCACGTCAGCTTGTGTGTGGGGGTCTGGTTCCTGTGTCCCTGGTGGGATCTGAATCCCAGAGGGAGTCCTTTAATGGGGCTGATGGGGGAAATGGAAAATCTGAGCCAAAAAGCGAGAAAAAAAAACTGAAGGAAATCAGAGCAAATGGAGAGCAAAATGTGTGCTGTTGCAAAGCATTCGGGTTTGTCTCAAAGGCCGAGAGCAGAAATTGGGGAAAAAATTATTTTAAAACCTTTTCCATGATATATTATAGAAGTGCTACCAATGGAAAGCAGTTCTTAACAGTTGATCAGACACCTTTTCCAGCTGTGTACAGCCCTGTGCCCTGGGCCGTGGCTGCACCTGCCATGGCTGTCCCAGTTCTGAGCGTGTGAGCTCTGCATGCATTGCCCTCTATTTCCCCATTGGCTTTTACAGCGTTGTGCATTATGATTTTATTTTATTTTAATTTCCTTTTTAATGTGTGTTCTGCATCTTTCTGTTTCTCTCTAACCTCTTTGCAGCCTCCTGTGCTTCCTACAACTTTTCTTTTCTCAGTCCTCAGGGCCTCAACTTTTCTTCTCAGAGCTCCTCCAGTCCCTTCTGGTCAGGTACCCCATGGAGAGACCCACAGCATCCCCAGCTTGAAAGCCATCACAATGGGACCTGCGTGGTCCCCGCTGTCCCTTCTGCACCCACAGGCAGTTCAGGGGGCCCCGGCCATGCCCTGCCAGGGGCTCAGCCTGCAAACAAGTGAATAAATCATGGCTTTGCCAAAAGCAAATGCTCACCCTAAAAACCAAAGCAGGAGCTTTTTTGGATTGATTGGAGCTGTTGCTGTTGAGAAAGGGTGCTTAAATTAATGAAGAACTCCAGAGCATTGGGATCTCATGATGTACTTCAAGCTCGACTTGCTCATCCCGTGTGTTTCACTAAAGGAACATTGGCATCACACCATCTTCCAGCCTGGTTGTCCTTGCTGGCTAAGGAGGACATCTCAGCGTCCAGCAGTTTTTGAGCTCTGGGATCTCAGCCTGCTCAGAACTGTGCTAAGGGGGTGGGAAACCTGGGCTGTAAGTGTGTCTGGGGCTCGGGCTCCCCACAGTGGAGTTCTGGCTTTAAATGCATTACAGACCAGTGTCTTCCTCCCTGTTTCTAAGGGATCAGAGCAAAAATGTGTCCTTTTTATGCTTTTATTTCCCAGCATTTTCTTTATGCTGGACAGGCAAAACCATCTGCTGAGCCACAGTTCTCCCCAAAGCTGTGTTTGGGAAGAACACAACCTTTCAGGGTGGTAGAACACAAGTGGGAATTGGGGGTCCTTTAAGTGCATACAAACTCTGTGCTGAAGCGGGCTCTGAGCAAGCTCCTGATAAAAGAGCTCAAAGCTGTCGTGGTTCTTGCTCCATTCTCCAGCCTGGTAGGGATGGATGATTGCATGCTGTGTGTCTGCCTCTCCTCCATCGCCATCCTCATCTCCTTCCATCCCGAGAGCTGGAAATCTGGGCAAAGCTTTTCCTCGAGCTTAGTTCAACCTTGGTTTGCAAAATTAAAACAAACCATTAATTAATACTCAAAAATCCCAGGACCGAAAGGGTCATTTGACCAAAACCCGTTATTCCTTCAAGGTGCTTATTTCTTTTTCTTCTCATTTTGCAAACTCCACAAAAAGAACCTTCCCCCCCCCCCCCATCTCTGCTTGCACCCTGCGGTGATGGGGCCTGTCCTGTACCTCTCTCCCTCTCCTCCAGCCCATCCGCACTGCTCCTCTGTGTGCAGTTCTCCAGCAGCCTCCTCCCCACGCCCTGCACTTCCCTGCACGAAGCAATGGAGATGCACTGCTCAACATCTCTAGGAGCATCCAGTCCCAGTTTTGAGGTGGTTCAAACACAAGCTGACTTGTCAACCCCCTTTTGGCACGGTGGCCCCATCAGGAGTTATAAATGGTGGAAAGGGATTTTTCCATGATTCCACCATGAATAATTGTCAATTCCTTTGAAATCTTTCCTTCTGCCACCACCTTTCCTTCTCACCAAATTGCCCCAGCAGTGCCCGCCAATGGGTCGCAGCCCCTCCTGGGCAGCCAGAGGGCTGTCCCAGCTCTGACCACGGGGCTCTATGAGCTCAACAGGATCCACTTCACCCCTGACCACCCCATTTCAGATGAGACCAGAGCTGATCCAGGTCACGGCATTGCAATGGAAGCCAGTGCCGTGGTGGAAAACCCAGGTTGAACCCCATGGAGCTTTCCCCAGGCTTCGGCTGCTCCGCGTGGTGGGGGCCACTCCCAACACTTTGCTTTGTCCCCCTGCAGTGTTCACCCCACGGGTCATAGGGACAGCAGTGGCACGCTACAACTTTGCAGCGCGGGACATGCGGGAGCTGTCGCTGCGGGAGGGCGACGTGGTGAAGATCTACAGCAGGATTGGCGGTGACCAGGGCTGGTGGAAGGGGGAAACCAACGGGAGGGTACGTGCAGTTGGTGTCCCATCCCCTGTGCAGTCGCTGTCCCATCTCCTTTCTACCACGTGGTCCACGTGATGTCCAGATCTCCTCTTCCTCAAGCTTGCATGCAAGGAAATTAATCACAGAATGATAGAATTGTTAACGTTCAACCACTGACCCATCCCCTCCATGCCCAATAACGGTGTGGTTCTGCAATTGGAAAGCTTGGTGGCCTGGGGGAAAGCAGCAAGCTGATGGTTTGTCCGGCTGTCCCATGGGGTTTGCAGCGCTGGGGGACACATTCCTGATCCCACATACCGAGGCAATGTACAGTCGCTAGCTCTGGGTCACTGTGCAAATTTTGATAGCAGCTGCATCTAACAGCTGCATCACCTCCCCATCACTGCCGTGTGGCTGGGTCTGGTGCTGTGGAGATAACTCAGNNNNNNNNNNATGTGTCCTTTTTATGCTTTTATTTCCCAGCATTCTTTTTAAGCTGGACAGGCAAAACCATCTGCTGAGCCACAGTTCTCCCCAAAGCTGTGTTTGGGAACACAACCTTTCAGGGTGGTAGAACACAAGTGGGAATTTGGGGTCCTTTAAGTGCATACAAACTCTGTGCTGAAGCGGGCTCTGAGCAAGCTCCTGATAAAAGAGCTCAAAGCTGTCGTGGTTCTTGCTCCATTCTCCAGCCTGGTAGGGATGGATGATTGCATGCTGTGTGTCTGCCTCTCCTCCATCGCCATCCTCATCTCCTTCCATCCCGAGAGCTGGAAATCTGGGCAAAGCTTTTCCTCGAGCTTAGTTCAACCTTGGTTTGCAAAATTAAAACAAACCATTAATTAATACTCAAAAATCCCAGGACCGAAAGGGTCATTTGACCAAAACCCGTTATTCCTTCAAGGTGCTTATTTCTTTTTCTTCTCATTTTGCAAACTCCACAAAAAGAACCTTCCCCCCCCCCCCCCATCTCTGCTTGCACCCTGCGGTGATGGGGCCTGTCCTGTACCTCTCTCCCTCTCCTCCAGCCCATCCCCACTGCTCCTCTGTGTGCAGTTCTCCAGCAGCCTCCTCCCCACGCCCTGCACTTCCCTGCACGAAGCAATGGAGATGCACTGCTCAACATCTCTAGGAGCATCCAGTCCCAGTTTTGAGGTGGTTCAAACACAAGCTGACTTGTCAACCCCCTTTTGGCACGGTGGCCCCATCAGGAGTTATAAATGGTGGAAAGGGATTTTTCCATGATTCCACCATGAATAATTGTCAATTCCTTTGAAATCTTTCCTTCTGCCACCGCCTTCCCTTCTCACCAAATTGCCCCAGCAGTGCCCGCCAATGGGTCGCAGCCCCTCCTGGGCAGCCAGAGGGCTCTCCCAGCTCTGACCACGGGGCTCTATGAGCTCAACAGGATCCACTTCACCCCTGACCACCCCATTTCAGATGAGACCAGAGCTGATCCAGGTCACGGCATTGCAATGGAAGCCAGTGCCGTGGTGGAAAACCCAGGTTGAACCCCATGGAGCTTTCCCCAGGCTTCGGCTGCTCTGCGTGGTGGGGGCCACTCCCAACACTTTGCTTTGTCCCCCTGCAG
Seq C2 exon
TGTTCACCCCACGGGTCATAGGGACAGCAGTGGCACGCTACAACTTTGCAGCGCGGGACATGCGGGAGCTGTCGCTGCGGGAGGGCGACGTGGTGAAGATCTACAGCAGGATTGGCGGTGACCAGGGCTGGTGGAAGGGGGAAACCAACGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]