BtaINT0159573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35830636-35838261:+
Coord C1 exon
chr3:35830636-35830723
Coord A exon
chr3:35830724-35838131
Coord C2 exon
chr3:35838132-35838261
Length
7408 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTGATTCTTTTCTCCTAAAGGAA
3' ss Score
8.36
Exon sequences
Seq C1 exon
GTACAATAATGAAGCAAAGCACATCAAGATTTTAACAAGAGATGGCTTTTTTCACATTGCGGAAAATAGAAAGTTTAAAAGTTTAATG
Seq A exon
GTAAGCATTGATTAGTTCTTTTCAATCTGTGGTCCTTAGTTTTCTCTTATTGGAAAGGTCAGTTTAGTTCTATAGTTTCTTGGAAATTTTGCTTGCTGACACATTTAAAGAGAATAATATCTTTTTTGCAGCAGAATCCTGAAAATTTTAAGAATTCTAGTTAAGTTTTATATTACTCTAAACATATTTTTCATTATAAACTAAGTTTGCAAGTTTAAGATAATATTTCAGGGTCCACACTATATGATTCTTAGAACCATAGACACATTCAGGTTCATTTCATGCAAAATACAATATACTGTCAAATGGAAAACCTTTTTGTATTTTCTAGTCTAAGTGACTTGTGCTACAGTTCTTCTTCATTACCTTCGACAATTAAACATTAACAAGATCACACTTTTACCATACGACAGTGATTTCATAGCAATTTTATATTTAAATTGAAACAGTATATTGTTACCAAGTTGCTTTATATAAAGATGATTCTGATTTTTAAAAGTGCAACTTAGCATACAAGAATATTATGTATTGTCACATAAACAATACATACATATCATTACATGTGCACTGTTAACAGTAAAGAAAAAAGTTCTTATTTCCTGAAAAGTAGTCTCAGGCCTGTTTCTCAAGTTGGAGAGTCTCTTAAGATAATGAAGAATTTGGATATAGGACATAAGATGCCTTTGTAGAGCTCTGTTAAGTACTTTGAGTAACATTGGGAAGGACCAGTCATTGACTGAACCATCAATCAAATGATACATACTGCATCCATCTGGAAAACATCTCAGAGCACTTTGCAGATGTTAACACTAAAGTTAAAACTTAGTGTAAGACAGTCTTACAAAATAGGCCAGCTTAAAAGTCTTACCCAAAAATTTAGAACTGGATCAAGACAGGAATCAGCATTTTAAAGAAATTGAAGCATCTTGTGACTGAGGGACTGAACTGAATTGAACTGAGTCAAAAGAAAAGTACGGAAACCTGTCTTGACATAAATATCACATTCCCAATTCAAAAGCTAAGGATGGGCAGCATCCTAAGGATGTGTCCTGGAAAATGCAAACCCTGTCAAATTGACAGCCAAGATCCAGGCATTCTCCTTGCTGGCAGCGAGTTATATTCTGCTGGAGCAAGCAAGCTGTGCACAGAGAGAACAGGACCTGAGGAGGTTTCTTCCTGAAAGGAAAACCTAGCAGGTAGGTGGCAAGTGGATGCACAAATAATGAGTGACAGCCCCAGCTGAGACATGAACAAAGCATGCACAGGGGGTCTCCACATCACTGCAAAGACACACCAGCTTGACTCTCACCTGCAGAACGTAGGGTGCTTGGTAATGAGGCTGCTCTGTGGTATCATGGTTAATATGAGACTTTAAAAAAAATGCTGTAGGGCCAAAGTTGACTACCAGCTTTGCTGACTTTGAAAGCAACAAAAGGGACTCCCATCACAAGAGGATGAAAGGAATAATCACTGGCAAGAACCAGTCAATTCAACTTTGTGTCACCTGGATTCAGCTCAAGAAAGTTCTTCATCCTCTAAGGTTAGATGTGAAAAGCCAGTAGATAACACCATGATCTGGATTAGTGATCATAGATCCTCAGGTTCCTATGTGCATGGAAAGCTGTGATTATAATATACGCCATAAAGACCAAGATTTCAAGTAATTTGTATCTGAGAGCGGTAAAAGTTTTTTCAGTGATGTTCCAGAAAGGGAAGTAAAAGAGTTCACATAAGCTAACAGAGCTTATTACACGGTGTGTGTAAGACATCAGAAATGTCACTGCTGGAGACATATACATGTGTTTTTTCCCTCCATATCAGGGGATCTTTTGTAAGGAAGTACATAATACAGATAGTTAAAGGGAGGGGATTAAGAATTAATTGCAAAACTACAATGAAACTGAAAACAAAAATAAGCAAATGGATATGATTGTGAAAAGACAGACAAGAGGCTAAAAAATCTCAGTCTTAGATAAATACTTCTGTCAGGAAGAAAATCACTGTAAAAAAATGCTGAAGAGACCACTGAACTCTCCTGGACCTACCTCTTCTTTGTTTCTGTTCATTTCTTCAACAAATTCATATTGAGGCCTCACTGTGTGAAATCGCTGTGATTCTGCAGAATTCTAAAAGGACTCAGTTCTGAAAAAATTCTCAAATTAGTAAATCTATCTGTACCAAAGCCTCAAATAGATCTATACTTGGACCCTAAACTAGGAAATGCCACACCTGGACACCTGATTGGAAGGAATGGCTCCTATCTGAGTTCCAGCCCCTCTGGAAGAAGATAAAGGGTTAAGAGGCACTTCTCTCTGGGAGCTAGGGGCTTCCCTCTGCAACTTTAAGGAGTTACCTTTTATCATGCCTTTTGTGTTGTTGGGAGATAACCCAGTTACCCTTATATCTTGGTCTAGGAATTGAGTTATTTCTTAAGTATAGTTCAGTTTCCTCCCGTGGTGACTGGTAACATTATATCACCTACGTAATATTCATTTATCTAATGACACTCTAGGATTAAATTTAATTGGGAAAGGATGTAAAATGCAAACAAAATCCAGAATTTGTTTTAAATCAGCCAGTTTCTCAAGAAGACTGACCTCAGGTTGTTATAACCTAACCTTTTTTCACCCCCTCTGGTTTCAGTGGCTTGGTTAATCGAAATCTTTGTTTTTCTAGTCATTACATTTAAATTCTAAAGGAATTTCTGTATCCAGATTACAAGGCATTAATTTTGTTCTAATTTTCATGTATGCCAGACAATCCATGTCCAAATGCTGTTTATAAATCATCTCCATTGCCCGTTTCCTTGGTAATTGGAATAACTGGCTCTCACTCATTATTTTTCAGAGAGACTTGAATTGTTGACACCACTGTGTCAGTGTGAGATAAGGAAAGCTTAGTGATTTCTTTTGTTTAGCGTCTTCTTATTTACTTGTAGTACCTGAAGGTCAATGACTGCTAAAGCGGGGGCGGATTAGACTAAAATATAGAAAGCAGAAAGGCATGAATTAGAAGAGCTGCACAGTGGCACTATTTAATTCCACCTAGTAGAAACATGTAGGAAGATCTACCCTCATAAGACGGTAAAAATGGAACTCAAATGTCTTCGATGCTTACTGAAGTGTTTGCAGCTTACCAAGCCATACAGCCCTAGGCCTTGGAAAAGTCATTTTTGCTCCCATAAAATCTGGAGGTGGATAGGTATTAAATGATTAACAAGTCCTTTTCAGTATGATAATTCTGTGTTTTCTACCCAACTTCTCATAAACTTTAATTCATACTACTCATGATATATCATGCATAAAATTCATGTTACTTATAACAAATTACTGATAACATTTATAACAATTTCAGTTACATTAAAGTTCAAAGTTATTGGCTTATGATTACTTTCAGGTTTATTTTCACATTTTTTTCTAAAGAACACACTCAGTTCAATAATAAAACTAAGAGAAGTGTGTTGCTGATGCAAATGATACACTGTATGATTCTTTCAGAGACCTTACAAAATTTTGCATTTAAAAAACTTAAATGAGGGAGGAGGGTTCAGGATGGATTTTCTTTTAAAAATTTAGAAAAAAATAATAAAAAATAAATAAATAAATAAAAAACTTAAATGATAATATTGGTCTCTGAGCAGAATTTAATTCCAGACCTTGCCTTCGCAAACCATGTTAAAACCACCATAATATAAACGCTGTATTCTGATCAGTGAAGCCATTTTGGGGATATAAACTTCTAATGCCGTAGGAAGTGTCACTACGAACAAAGCTGTAGGAGGGGATGGAATTCCAGGTGAGCTATTCCAAATCCTGAAAGATGATGCTGTGAAAGTGCTGCACTCAGTATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCGCACAATTGTAGTCATCTCACACACTAGTAAAGTAATGCTCAAAATTCTCTAAGCCAGGCTTCAACAGTACATGAACCATGAACTTCCAGATGTTCAAGCTGGATTTAGAAAAGGCAGAGGAACCAGAGACCAAATTGCCAACATCCGCTGGATCATCGAAAAAGTAAGAGAGTTCCAGAAAAACATCTACTTCTGCTTTATTGACTACACCAAAGCCTTTGACTGTGTGGATCACAACAAACTCTCTGAAAAATTCTTCAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAATCTGTATGCAGGTCAGGAAGCAAAGTTAGAACTGGACGTGGAACAACAGACTGGTTCCAAATAGGGAAAGGAGTACATCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTAATGCAGAGTACATCATGCAAAATGCCAGGCTGGATGAAACACAAGCTGGAATCAAGACTGCTGGGAGAAATATCAATAAACTCAGATATCCAGATGACACCACCCTTATGGCAGAAAGTGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGTTTAAAACTCATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGCAAATAGATGGAGAAACAATAGAAACAGTGACAGACTTTATTTTTTGGAGCTCCAAAATCACTGCAGATGGTGACTACGGTCATGAAATTAAAAGATGCTTGCTCCTTGGAAGAAAAGTTATGACCAACCTAGACAGCATATTAAAAAGCAGAGACATTCCTTTGCCAACAAAGGTCCATCTAGTCAAAGTTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGACTATAAAGAAAATTGAGTGCCAAAGAATTCATGTTTTTGAACTGTGGTGTTGGAAAAGACCCTTGAGAGTCCCTTGGACAGCAAGGGGATCCAACCAGTCCATCCTAAAGGAAATCAGTCCTGAATATTCTTTGGAAGGACTGATGCTGAAGCTGAAACTCCAATATTCGACCACCTGATGCGAAGAACTGACTCATTTGAAAAGACCCTGATACTGGGAAAGATTGAAGGCAGGAGGAGAAGCGGATGACAGAGGATGAGATGGTTGGATGGCATCACCGACTCAATGGACACGAGTTTGAGTAAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCCGCAGTCCATGGGGTTGCAAAGAGTTGGACATGACTGAGTGACTGAACTGAACTGAAAACTTCTGATATTTTAGCTTTTTTTTCTTTTAAGGTGGTCAGATTCTACTCCTTTGCTTCAGCAAGTACACTTATAATCTGGGCCCAAGCAAAGAAGAAAGAACGGAAGAAAAAAAAATTCAAGTTATAGCATGTGTAAAACCATATCATCTTGGGTCTAAGAAAACAAGAAGATACTTAGAAAATGCTCCTTCCCTCTGCTTCCCGTTTTGCATATTTACATTTACCAGGTTACTATTTGGTAATAGTACAATGTAGTTGGGAGCAGAAACTTTGGAGCCAGACACCAGTTATACAACCTTGCCCAAGCTGATTAATCTCACTGAGCCTTGAGCATCAGTGGGGAAAAGACCCATCTCTTGTTTCTTGTCTGAAGATTGTAAGAAACTATATAAAACTATACATATACTATATAAAACTATATATATATATACACACACACACTATATAAAACTATGTAGCACATGTGATCATGGTAGCTCTCATGATTATTCACAGGTACTAGATACTTTATCCCTTCTTTGCTATAGTCTGTGAAATGGTTTATTATCCCATTTTACAGATGTGAAAGGTAAAGCCTCTCCATTTGCTTTATCCAGTACTTGAACCAAACCATGCTGCTTTTAGTTTATGAAGATGGTCTTTGTTATCTTTGTCTGTTCCCAGCCTGTCTGCTCTACTTAAAACAATCCTTTCATCCTTCTTGGCTTTTGAAATTATACTTTTATTCAATTTAAGCCAAGCTACCTCCTCTCATGAACTCGTCCCTCTTCCTTCCCTCTGGACTCTGAAAAGGAGGCTCTCTTTCCTTCTTGCCTTCAAACTCCCATAACCTTTCTCTTTCCTTCCACGGTGTGTATGCCTAGGAACCTTATCTTCATAATCTCTGTGATCCCTGGAACACCCCACACCATGTATCCCACAACTTATCCAAATTTGGTCATAAATAATAAATAAATCGATGATTCTCTTTCTCTTCTTTCAGGTGATTTTTGACTCGATTGATTTGTTTGGGGGACTTTGAACATGAGCACTGAATGGAAGGGCTGAGTTGATGACAGTGTGATTTTTTTTTAAGAAATGAGTTGCTTTTATACAGTTTTAAATAATAGTGCTGTAGAATAAGCACTGAATAATTAGGTTAAAAGTTATTTTGCATTTCTTTTCATTTCAGGTTTTTCTAAGAAACATAACTGGTACTCATCTAGTGATAATATGCATTTTATATTATGAATTAACCATTATTAATTTTCTGTTTAAAGTAGAGGGATTAAGATTTGTGCAGAATCTGTGAAACTGACATCGCAAAAGAAATATTCTGAGATCGCAGTATGAAAGATGGTGGGTGGTTATTATATTAGGCTTGGATGTATTTAAGGCAAATTAGGTATAAGAGAAAATTGGAAAGAACTACATTATTGACTTCTGTGAGTACGAGGTGACATACAGAGCTAAGAGAAGGTCACTAACACTTCCTCGTAAGCCAGAAGCAATGTCAAGAAAGCGATATTTATGGTTTAACAACTTTGGTTTACAGTGGAAAAGCATATTTAGGATCAAGTTTGTTTTTCTGCTATGTTGAAAGAAAATGCAGGAAACTATAGATTACTATATATTCATAAAACAGCCCTTGCCTCCCTAAACAAAAATAAAGTATTTCATAAGTAAGAACAAGAATTTCTGTTCTGAGTTTGAGGTTTATTATGGTTTCTTTTTACTTACTACATCCGACTGAAGACTAACAGGATATTGAGTAACAATGGGGGGTAACTCACATTATAAATGGCCTGGGTAACAAGGACAATTACTAGTTGGGTGTATTGTACACCAGGAAGCAGGGAGAGGTTACCATTTACTTACTGTAACATGTTGTTTAGTCACTAAGTTGTGTCCAGCTCTTTGCGACCCCATGGACTATAGCCCGCCAGGCTTCTCTATCCATGGGTTTTCCAGGCAAGAATATTGGAAGGGGTTGCTATTTCCTTCTCCAAGGGATCTTCCTGACCCAGGGAAGCCTGTGGCAGGCTAGAGTCGAACCTGCATCTCCTCTTTGGCTGGCAGATTCCTTACCACTGAGGCACCAGGGGGCTTATGGAAAATTTAGCATTAAGTTGATTATCCCTTCATTGCATATCATTATGTGTCAAGGAGTTTGTGTGTTTGATTCTTTTCTCCTAAAG
Seq C2 exon
GAACTTGTGGAGTACTACAAGCATCATTCTCTTAAAGAAGGATTCAGAACCTTGGATACAACTCTGCAGTTTCCATACAAGGAGCCAGAACATTCAACTGGACAGAGGGGTAATAGAGCAGGCATCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575:ENSBTAT00000020771:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.205
Domain overlap (PFAM):
C1:
PF0063014=Filamin=PD(4.1=33.3),PF0001719=SH2=FE(38.7=100)
A:
NA
C2:
PF0001719=SH2=PD(6.7=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]