MmuINT0172731 @ mm9
Intron Retention
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109460840-109467351:+
Coord C1 exon
chr3:109460840-109460927
Coord A exon
chr3:109460928-109467221
Coord C2 exon
chr3:109467222-109467351
Length
6294 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TTTAATCTGCTCTCTTAAAGGAA
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTACAATAATGAAGCAAAACACATCAAGATTTTAACAAGAGATGGCTTTTTTCACATTGCAGAAAATAGAAAATTTAAAAGCTTAATG
Seq A exon
GTGAGCATTGATTATTTCTTTTCAATCTATAATTCCCATTTTCTGCTGTTAAGTTAGTTTAATTCTGTAGTTTCTTAGCAATGTTACCCATTGAAAATTATTTAAAGATATAGTGTGGGCTCTAGCAAAATCCTAAATTTCTAGGTTGAAGAACTCCAGTGCAGTTTTACATTGCTCAGATGGTATTGATCATTATAAATGAGGCTTGTAAGTTTTAGATAAAATTTTAGAGTATACACAACTCATGAATCTTGGAGCAACTGCCAACTCAAGTATAACTGTCATTGGTTTGTATGGGTGTTTGAGTGTATTGTCTCAGTGGCAAATGGCAAATCTTTATTATGTCATTCCTCTTCTTATGCCCTCTGTCTCTCCTTTTAGCTACCTTTTGTCATCATCAGTTATGACAAGAAAAATTTTAATTAATAAAATACCTCTTACATTTAACTCTTTCATAAAAGAGGCCATAGAAAGTAAATTTGCAATTTTCTTTATATTTTCTGCTATTATAAATTGTGTAATCGTGACTAGAGAAATGGCTAGTGATTAAGAGCACTGGCTGCTTTTCCAGAGGTCCCGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACACCCATCCGTAATGGGATCAGATGCCCTCTTTTGGTGTGTCTGAAGACAGCTACAGTGTACACAGATATATAAAAATAAATAAACCTTTAATAAAATAAAATAAATATTGTAATCACAGTTCTCATTTATTAATTAGACAAACATCAGTTTATATTTTTGCCACAGTCATTCATTGATATTACACAGACATTTTGTGTTGAAATGAAAAGCATATATTGTGGCTAGAATGTAGTGATCAATTCTGACAATTTGTAAATGTCTCAATAACTTCCTTAGTAGGTATATTGTGTTTATGTCTTACAGACCACATAAACATTTCATTACACACACGATTAACAGTACATCTTATTTTCCTAGGAGTGGCTTCAAATTTTCTTTTTCACTTAGGTAATTTCTTAAACTAATGAAGAATTTGGACACAGGACACAGGATACATTTGTAGATGTTAAGAACTTTGATTAGCTTTGAAAGGGAAGATCCATTGACAGAGCTACGAATCAAATCGTATACACTAGACCTTTCCTGAAAATAACAGAAATCACTTAGGGATACAAATGAGGTAAAATTGAGTATAAGAAAGCTTACAAACTCAGCCAGCTTGAATGCCTTACCTAAAAATCATTTCAAGATAGGGACCAGTGTGTTAAAGAAATTGAAGCATCTTAAGTGGAGAGAAAAGGAAATGGGAAGAAATTTGTAGACATAAATAGGACATCTGAAATTCAGAAGGAAAGGACAGGCAGCCTGGACAGTCATGGAAAAATGGAAACTCTTGTCAAATTGGTAACCAAGATCCACTCATCCTCCCTGCTAGAGGTAACTTCCATTCTGTTGTATCTACCGAGCTGTGAAAGAGAAGACAGAACAAGCTGAACCAGAAGTTTTTCATGCACTAAAAACCTGAGAAGGATATGACTAGTGGGGACACAGCTAATGAGTAACAGGCACAGCCCAGACACGATGAAAGCATGCATGGGGCACACCATCTCTGCAAGACACGCCAGCTGGAGCTCTTACCTGCAGAACTTTTTTGGGTGGTAATGAGGCTTCCTCACAGTATATCACTATAACAGTTGATGTGACACTTGAAAAAAGCTGCAGGGCCAAGGACGACTGCCAGCCCTGCAGACATTGAAAAGTCGCGAAAGAAACTCCTGTCGCAGAAGACACACAGAAGCATGAAAGGAATGGCCACTGTAAGGGGCCGATCAGCTCAGCTTTGTATCACCTTGGTTCAGCACATGGAAATCCTATAGCAGGGACGGTTAGGGATGAGAAAACCCAGTGACACCATCATGGGCTATCGTTCTTATATGGCCATGACTATACTGAAGCTGACAAACTCCTCAATTTAAATAATTTGAAGCAGAGACCATTAAGGTTTATCCACTGGTCTCCTGGAAAGGGAAGTAAAGGCACAGGTCTCAGAATTCAAATAAGTGACACAAATGCTGTGTATCACTTATGAATGCCACTGTTGTGGACACAGGCTATACCTATGCTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTTTTTCTTTTTCTTTTTCTTTTTTCCTTCCACACTGGGAGATCTTTTATAGGGAAGCCCAGACCACAATAGTTCAAAAGAGATGATGGAGAATTAAGAGCAAAACTGCAGAAACTAAAAAGAAAGGAACCAGCTTAAGGATATTTGTGGAAATAAAGAAATGTAGACAAGGAACAGAAAGCCTTTAGTTATAAGCAAAGACATTTCACCAGCTTTATCAAATAACCACCAATTGCTAAAGAAGCCGTAGAGCTAGCTGGGGTTTGCCCTGCTTTTTGTTCATGTGTTGAATACGTTTATTGTGAATCTTTATTTTTAATTTTTGGAGATGTGTATTCAATAAATTCAGTAAACAGATAAGCAGTGATATACCAAATCTACATATTATATATTTTTTAAAAATTAAATGTGTATTTATAATAAAATTTTATTATTTTTCCAAAAGGCAGACTTGGATTCTAATAAAATGTTTTAATAGAAGGAGGCACAATGTTTAAGATAAAATGCACAAAGAAGAGTGTGAATTTTGAATTATTTTGAATCTTGGAAAAACTCAATCACTATAGTTTTAAGAGACTTCATAATAAAATGACTCAATTGATCTAGAATAGCTTACAAGTTAGCAAATACATGTATGCCAGAGAATTCAAGACAGTGGTGTCCTGTAGACTTAAGAGAGAAAATGTCCTGTGGATACTTGCCGAGAAGAGGTGGTTTGTATTATGGTAACATACTTCTTTGGAAGAGGAGAGGAGGTTCCAAGATGTAGGATGTGTCTTTGAAACAAATAAAGGTCGTACAACCTCTAGCAGACACAGTTTATTGTGGTGTGTTATGTAGCACAGTTCCCATCTCAGTAAGTGCTAGTGTGTAGATCTGCACCATTTCTTAGTAGTTCATCATCTCACTAATCTCACCATCCACATTACATTATGTTCTGCATACGAATCACCTTATAGCTTGGAATAGATTTTCTATCAGAAAGGATTCTAAGCACACGCAGACTCTAAAAGCTTATTTTAAATTAGCTGGTGTCTCATAGAGAAGGCTGAATTTGGTGCTTGGAACCAGAACTTCTTCCCTTAGGTTTCAATAGCTTGGTTAATCAAACCCTTTGTTTTTCTTAGCCATTAAGTTCCAACCCTAAATGACTTTCTGATTCCAGATTACAAGGCATTAATTTTGTTCTGATTTTCATGTATGCCAGACAAGCTATGTCCAAATGTTGTTCGTAAGCCATCTCCAGTGCCTGTTTCCTTGGTAATTGGAATGACTGGCCCACACTCATTATTTCTCAGGGTTGGATTGTTGACACCACTGTGTCGGCTGAGATAAGGGAAGCTTAGAGATTTCTTTTGTTTAGAGTCATCTTATTTGCTTGTTGTACCTGAAGGTCAATGACTGCTAAAGCAGGGGTGGATTAGACTAAAATACAGAGAGCATAAAGCCGTGAATTGGAAACAATCCACACTGGCACTCGTAATTCTACTCGGAAGCCTGTTAGGAAGATTTGCCACCTAAGACTGTAAAAATGTAACTCAAATGAGTTCTATGCTTAGCCAGGTATTAAAGACCATCTGCAGTTTACTAAATTGCCTCACCCTGGTTCTTAGAAAAGTCCCTTTTTTTCCTTCTGTAAAAATATTAAATGATCAACAAAACTTTTTTCTGTTCAATAATTCAATAGTTTATAGCCAACTTCACATTAATCTTACTAATGATTTATAATTTATAAAATTCACATTCTCTCTCATAAAGTTAAATTGAAATTCGAAGCTATTGAACTGTACAATTTGTTTCAGATTTATATTTATATTGTCAAAGAAAATAGCACATTTTAATTAAAGTGTCAAAGCTAAAGGAACAACTTCTTGGTATCACGGGTATCAGTGATGCCATATGCAAACGGAGTTTTCCTTAACCTTTTTATCTCATCATCAAAAAATAAAATGATCTTATTTTTTACTAAGCATAATTAAACTTCTGAGCTACTCTTAGGAATCATATAAAAAATCGGCATATTACAAATGCCATAATCTCATATAGGTAGCCATATCCAAGATACAGTGTTCTATTTGGTGTTTTGTTTCATTTTCTTTTCCCCTCTTGTTGTTAGATTCCACACACCTTCTTTTCATCAAGCACTCCCGTTCTAGTTCTCTGAGTCCAAGGAAGATCTGTGAGCTGTGTGAAATGTTTTATGGCTCTCATTTTCCAAATGTGGGAATTGACAAAAAGAATCTTCATTTGCTTTATCCAGTGATTTAGATAAACCATATTGCTTTCAGTTTATTAATGTGACAGAATGTGTGTGTGTGCTTATTAAAATGTATGCGCTCTTTGCACAGACACAAATATGTAGAGACCAGAGCAAGATATCAGATAATATTGTCTCCCCTTCTCTCTATCCCATGTCCTCACAGACCCTGGAGCTAGGCTAGTGGCCAGCTGTCTCCTCCAATCAATAGTTGTGGGGTTATAGACACATATGTGGCTATAACTGATTCCTACATGGGTGGCTGCATGTGAACTCATGTCTTCTCTCATGCTCTGTAACAAGCACTCCTATCTGCTGAGCCATCTCCCCAGTCCAGGACTGGGATTTTCACTTAGCCACCTTTGTGTCTCAACCCTGGATACCCCCACCTGAAATGATCCCTTCGCCATGGCTGTCCATTGAGATTTTTACCTGGTCTTTGATTTAACCAAGCCACCTTTATCATGCTGTCTCTCTTGCTTCCCAGTTGAACACACTAAAAAATGTTCTTTGTGGCCCGAGGTTTGATAACCCTTCACTCTCCCACTTGTAGTAAGAACTCCTGGAGGGTGGGCACCTTGGTTTCAGCATTTTTCTGATCCCTGGCGCTCCCAGTGCAAAGCAGTACAAAGCATGTCTGAGTTAGACCAAAAAAAAAAGTCATTAATAATCATATCTTTCCACGTTGTGCGTGAGTTCTGGCCTAATTGATTTCTTTTAGGAAATTTGAACTTAACCACTGACTAGATGTGTTGGATCAATGGACAATGTTTCTTTCTCAAGAAGAGTTGCTCTTCCATACTTTTTAAGGGTGCTATGACAAAAGCAATGACTACTTTGTTTAAAGTAATTTGTTTTTTATTTTCATTTCAACTATTAATCAGATACTTCTTATCTGCCACATTAGGCTACTGATAACATTTTCATTATGAATTATTCTGTTTCGGTTCATGGTAGAAGGGTTCAGATATGTGTAGAATAGGAAACTAAAGATACCACTTAAGAGGTTTGAAGCAAAATAACATAAAATGTCCTCAACTAATGATACAGAAAAAGAATTTCCTGAAGATTCAGTTCAGAATATGGTAGAAGTTTATCTGAGGCTTTGCGATGCTTAAGGCAAAGTATTTCTAAACAGCAGTTAGACAGAACTACCTGGCTGCCCTTTGTGAATGCTGGGTGGCATTGCGGGCTGAGATGTATACTAACGTTTCATCAGTGTAAAACAGGTGTGATGCCGAGCAGCATTGAGAGCTTCATGAACCTTTTTTTGTGGAAGAGTACATTTAGTATTAAGTTTGTTTTTCTGACAAGTTGAAAGCAAAATGGGGGGAAAGTAGCAATTGCTATATAGTCAAGCAAACAGCTGTTCCTTTCGTTTTCCTTCAGAAAGACACGTCTCTCCCTAATAACAACAGTAATTACTACCCTGAGATCGAAGTTTAACATGGCTTCTTTTCAGCACCACATCTGACAGAAGACAAACAGGATGTTCTGCGTGCCTGAAGAACAATAGAGAAGAACCAACATGAACAATAGTCTCCAGTAACCAGGATAGCATCTTGCGGGGAGGGGAGGGGTCAGGTACAACCAGACAGTAGGCAGAGCTCTAACTCACACTTTCATATATCTGGAAATGTTAGGCTTAAAATGAGTATCCTTGTATCACATATAATTAAGTATTAAGGGGTTTATTTGAGAACAAAAATAACAAGACCTCTCTTTAATCTGCTCTCTTAAAG
Seq C2 exon
GAACTTGTGGAGTACTACAAGCACCATTCTCTCAAAGAAGGGTTCAGGACCTTAGATACAACGCTACAGTTTCCATACAAGGAGCCAGAACAGCCAGCTGGACAGAGGGGTAATAGAACAGGCAACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-Vav3:NM_020505:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.369
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100),PF0063014=Filamin=PD(13.2=33.3)
A:
NA
C2:
PF0001719=SH2=PD(6.7=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: