BtaINT0159752 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107153224-107155055:+
Coord C1 exon
chr2:107153224-107153334
Coord A exon
chr2:107153335-107154852
Coord C2 exon
chr2:107154853-107155055
Length
1518 bp
Sequences
Splice sites
5' ss Seq
AGGGTAACC
5' ss Score
5.4
3' ss Seq
ATCCCGGGGCCTCCCTGCAGGGC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTGGAGATGTCCTGGAAGAGTTTCAACCGTGGGGATGTTTTCCTCCTGGACCTTGGGAAGCTCATCATACAGTGGAATGGGCCGGAGAGTAACCACATGGAGAGACTCAGG
Seq A exon
GTAACCCTGCCCTGTGCCCACCCCCCAAATCGCACGCTGCTCCTCCCTGCTCCTGCCTCCAGCACCTGGCCTCCCTCCCAAACTTGCCAGACTGCTGCCACGCCTCCACCAGCCCCCATTTCCTCAGCGCTCTCTTCCCTGACTGTCCGGGGTGCTATGTTTGAAGGTGAATCTGAGTCTCCATGTGTATGCAGTGAGGTATGCGTGTAGGAGTCTGCATGCATGCACTGTGGTAGATCCACTAACGTCTGATGAGTCCCTGCTTGTGGCAGATGCTGTGCCCAGCACTGGGAGCCGGTGGTCAATGAAATGGGCAGAGCCCTGCCCTAGCTCTGGCGTCCAGTGGGCCATCCAGGAGGGGAGACAGATGTGAAGGGAATACTGGAGAAGTGAGGGGTGGGGAGTGTGGCTCTCAGGGTTCGGAGGGGTCTAAGAAGGCTTCTGGGAGGAGGGCGGGTGGGGAGGAGCGGGCCGTAAGGCAGGAGAGAGGTGTATGGCAGACAACCTTCCAGCTCAGACGAAGCCCGAGACGGGGACTTTGGGGAGTTTGGAAAGGAGGGTGGGGGTGTCTCAAAGGATGTGCTGTGTGGTCAGGAAGCCATGTGAGAGGGTTGAAGTTTGTTCTCAGTGCCTGGGATGCCGTTGAAGGGCACCCTGACTTCTGAGGGGCGAGGGGAGAGGAGGAGCTGAGGGCACATTCCTAGGTGAGGAGGGGGCTGGGAAGGTGGAATCACAGGACGTATGTCAGGTTGGGGGTGACAAGAGAGGAGAGAGACAGAAGTCAAAGGTTGTGCTTTTTGTGGGGATGGGTAGGGTCCCATTTTCTCAAATGGAAAGATCAGGGAGCAACAGAGTTGGGGAGAAAATCAAGGTTGGGTTTGGGGCATCTTAAAATGGGGCTGTCTTGGGAGCTGGATAAATAGGGCTAGGCTGGAAACAGAAATGTGGGCCTGGCGAGGGGGGCAGTGGGGTGAAGGGAGCCGTGGAGAGGGGAGGGGGCCGGAGTGGAACGGCCGGGAACTGGGTAGGAGACACTAGGCTGAAAGAGTGAGCCAGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCACATGTGTGTGAGCCCATGTGAGGCTTTGTGTGTGTGTGAGTGTGTGAGGGTGTGTGTACACGGCTTTGGGACAAAGAGACAGGACTGTGATCTTCAGGGCTCACCTCTCATGCAAAACTTTGAAGCAAAATCACACATTTCAAACAATGTCAAAACCAAAGGCCTGGCAAGTCCCGCCCCCTCACCAGACCCCCTCTTGCTCATGAAGAAGACTGCTCTTCCTGAGGTTTTAGTTTGGCTTCCTGACACACATCTTCAAAGCCTGGTCCCCTCCTTGAAAGGGAAGCGCTGGGCAGGTGCCTCCCCTTTTGGGGCTGCTGGGCTCTCCAGGTGTGGTCTGGGGTGGCGGATGCTGCCCTGTCCACCGCCCCCGCCGCCCCGCCAGCCTTCATGCATCCCGGGGCCTCCCTGCAG
Seq C2 exon
GGCATGAACCTGGCCAAGGAGATCCGCGACCAGGAGCGGGGTGGGCGAACCTACGTGGGCGTGGTGGACGGGGAGGACGAGAAGGCCTCACCACAGCTGATGGAGATCATGAACCACGTGCTGGGCCAACGGAAGGAGCTGAAGGCCGCTGTGGCCGACACGGTGGTGGAGCCGGCCCTCAAGGCTGCCCTCAAGTTGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543:ENSBTAT00000024683:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(48.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(40.0=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGATGTCCTGGAAGAGT
R:
GTACAACTTGAGGGCAGCCTT
Band lengths:
312-1830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]