MmuINT0172931 @ mm10
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74419795-74421455:+
Coord C1 exon
chr1:74419795-74419905
Coord A exon
chr1:74419906-74421252
Coord C2 exon
chr1:74421253-74421455
Length
1347 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACC
5' ss Score
5.26
3' ss Seq
CATCTGTGCCCTCTCTACAGGGC
3' ss Score
11.17
Exon sequences
Seq C1 exon
GTGGAAATGTCCTGGAAGAGTTTCAACAGAGGGGATGTCTTCCTGCTGGACCTTGGGAAGCTTATTATCCAGTGGAATGGGCCAGAGAGTAACCGCATGGAGAGACTTCGG
Seq A exon
GTAACCCCATCAGGGCACCTCATTTCTGCAATTCAACATGCCTCATCGGCTTCACTCGTCTCAGTGTCACCTACCCTAGTCAACCTCAACCCCACAGCCCCGCAACTACCCCACCCCACAGGCTTCTCTCTGGCACTTCTGGGGACAGGACAGTGTGTGAAAGTAGACCTAAGTCTCTATGTACATGAAGAGGCATACTGCTTGTGTGTACTTGTGGCTAACCCTTACGGTAGAATATGTCTCCGTAGTATGGCAAGCCCCATTCTCAGCCTTGGGTATTCAGGAGGATGAGGTGGGCAGAGCTTTGCCCTGGCTCTACCCAGAAGCCGGCCGACTGGTCAAAAAAACGTAAGGGAAAGGATGAATCAGAGAACTGGAGAAGTTCGGTACTAGGCATACAGGGAGACTTTGGGGATCAGATGGAGGTGAGGCAAAGGCCCTGGGGCAGGAAAGTAGCTGGTATTGCCCAGTAGGAAGATGCTGAGCAGGTAGCAGGTCTCATCGGCAGGATGTGCGCCCAACAGGTTGTGAGTTAGGTCCTTACTGGGTACACCCAGCTAATGAAGCTTATCTGATCTCTAAGTGGAAATGGGCTGCGAAGGGGACCAGGTGGAATCCCAGCTTAACTATGTATGGGGTGAAGATGCAAAGCCTTATGCTTGAGAACAGTAGGGAAGAGTAGCGGCCCAGTTCCTGAGATGGGGAGAACCTCTAGGGGGGAAACAGAGGGCACTTTTGACTATCTGAAGAGGCTCTGTCCTACGATGAGAGCCGAGAGCTAGGCTGGAGACAGAAGCACACAGCTGTTGCTGTCCACAGGGCCCAGGGACTCCAGATGGCTCACGAAGGGAGTGGTCTTGGGCTGAAAAAGTGAACCACAGTGTGTGTACACATGAAAGCTGTCACTCTCCGGACTATGTGTGCAGATACATGCCTGTGTGAACTTTCATGGAACCGAACTATGTGTGTGTCTAAGTATTTGTGTATAGATATGTTCATGTGAATTTGCATCTGCACCGTGAGCATGTGTACCTTGGGCAGACTAAGTAGAGTACTATGACCTTTGAGGTTCAGCTCTTGTACAGAAGGGAAGCCATAAATTCCCAACAATGTCAAAACTACAGGCACAGCTAGACCATCGCAAACACACCTCCGCCCCCAACCATCACCTACGAGGAGATCTACCTCCCCATAGCTTCCAACCGTTGCCTCACACACCTGAAAAGCCTTGTTTCCACCTCTTGTAGATCTGCACAATGGGGTGGAGTTTGCCCAGCAAAGTTCAGGGTGGTGAACACTGCTACCCTGTCTGCCAACCTTCATGGGTCATCTGTGCCCTCTCTACAG
Seq C2 exon
GGCATGGCCTTGGCCAAAGAGATCCGAGACCAGGAACGGGGTGGACGTACCTACGTAGGTGTGGTGGACGGGGAGAAGGAAGGGGACTCCCCACAGCTGATGGCAATTATGAACCACGTGCTGGGCCCACGCAAAGAACTGAAGGCTGCTATTTCTGACTCAGTGGTGGAGCCGGCCGCTAAGGCTGCACTCAAGCTGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175:ENSMUST00000027366:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(48.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(40.0=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAATGTCCTGGAAGAGT
R:
GTACAGCTTGAGTGCAGCCTT
Band lengths:
312-1659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types