BtaINT0160231 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010355 | VPS37A
Description
Bos taurus vacuolar protein sorting 37 homolog A (S. cerevisiae) (VPS37A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046161]
Coordinates
chr27:19023369-19025957:-
Coord C1 exon
chr27:19025889-19025957
Coord A exon
chr27:19023513-19025888
Coord C2 exon
chr27:19023369-19023512
Length
2376 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTCTTGATTTTCTTTTTCAGAGC
3' ss Score
11.73
Exon sequences
Seq C1 exon
TATGAATTACTTACACAAATGAAATCAACTTTTGAAAAGAAGATGCAAAGGCAGCATGAACTTAGTGAG
Seq A exon
GTAAGATTGTTGAGCTGTTTTCTTTTACCATAAGAATTTTTACTCTTTTTTTTTTTTTTTTTGACAGTTAACAAAAACATGTTTATTTTTGTCTTCAAAGAACAAACTGTTCTTTTCCCAATATAATCTTGATTAACTTACAAAAATGGGCATTTACAATGCATCGTCAAAGCATTTCCCTTTAATGGGAAACTTGACTTCACAGAATACAAACATTAAAAGACTAAAAAAAAACTTTTGTTGTCATTACAAGACAGAACAGCATCTAGCATAAGTCAAGGAAGTCATTCATATTTCAGGTCCTTGTCCTCCAGGAACCAGCATTGGTATATTATTTCCCTTTAGAAAAATTGGATCTAATTTAGTAATTCTTCTTCCTTCTGGTATGATTTCAAATTCAGTGACATCTTCCAATACCATATTGACAAAGTCACCAAATCCCAGAAGTATACCAACAGTCTCCTCATCACTCTTCATCTCAATGTGAATTCTTGATCCTATCCACTTGTCCACAAGATCTAGAGGAAGCAGCTACAACGGGTTAGTGGTCAAATTAGCTGCCATGGCTAAGCTGGAAGTGGACTAGAAGTTTTACTCTTAATATACACGAGCCACATTCTTAAATGTATTATTATCAGAAAGCATTTATTAGGCATTCGAGTTTATAAGGAGATGATAAACAGCCTTGAGTTATGCAGATGAACAGCTCTCAGTTTTATGAGCCATTATCAGTCATTTTGTGGTCATGCAAGAGCATTTGGTTCCAAAACAGAGAAATATAAAAAGCCCCATAAATAACTGCTCTGGGAGAGTTATTATAAAGCCAATTTAACTCTTCTAATAAAAGTTAAAAAGAAAAATTTTAGTTTTAGACTTACTTGCAAGCCTGTATACAGCTATCTTAAACAAGAAGTTAGCAAATTGGAAAATATAACATATAGAAAGTATAAAATATAATTCACCACAAATAATAACTTTATACTAGAAATCTAGTTATGTGAAAAATCGAAAGCTTTTTATAAAATTAACCCTTGTTTCTGAAGAAAAAAAAAACTTTAAATTAAAAGGGGGAAATCATTTAAAAAATTAAATCGGACATAATCTTCATATATCAACAACCCACATCATAACTAACAATATTCTGTTTCCTTTAAAATCAGGAATTCTAGGAAGTGAAGCCAATGTAGTAAAACATAAACTAGAAATAAAACAGGAAAAGAAAATGGTAAAGAGAATATAAATTTATAAAAGATTTCATATAATACGATCGTTCTTTTTAACTTTTTATTTTGTATTGGGGTATAGCCGATTAACAATGTTGTGATAGTTTCAGGTGAATAGCCAAGGGACTCAGCTGTACATACACATATATCCATTCTCCCCGAAACTCCCCTCCCATCCATGCTGCCATGTAACACTGAGCAGAGTTTTCCATGTGCTATACAGCAGATCCTTGTTGGTTAGCCATTTTAAATACAGCAGTGTATACATGTTGATCTCAAACATCCTACCTATCCCTTTCCCCCATTCTTCCTGCCTAGGAACTGTAAGTTCATTCTCTATGTCTTTGTATTATCTCCTTGCTTTCTTTCCCATGTGGTCTTCCTCCATTTATACTAAAGTTTTTGGCATGTTCTGGCCTATCTCAGTTTTTGCAAGGGAAGATTTACCTTTGTTTATTGATGTGTTTTTGGCTATTATGTTCCTGGTCGGCTATTAAAAGGTATATGGTACTCTAGACCTTTGTCCTGGAGTATAATTTCATTGCCTTTAGGAGCTCTGGAATCAGAGGGTAATGTGAGAGATTTTTAAGATTACTTGATCCAACCAATTGCTGACACTGTGCAATTGTTATATCTTTTGCATTGCACTAAGCTTGTTGCATATGTTGCCCATTATTCCACACAAAAACCTATGAGGGTAGGTATTGTTACTATTTTTCCATTTTACAGATGAGGAAACTGAGGCACGTGGATATTAAATAACATCCCTGAGGTCATACAAATGGAAAGTGTCAGAGTCAGGAATCACACATAAGAAGTCCTCCCCTCTCTTAGCCAGAAGATCTGAGAGAATCAATTGAAATACTTTTGGAGGCACTTTAGAGCTTACTAGATGAAGAGGCTTTTCTCAGTAATCAGCACCATTCCTTAGACAAACTTAATAAACTCATTCCTTAATTTAATAAAGAATACTAGAAACCAAAAGCAAACATCACAGTTAATTACTCAACATTTCCAGGATCATTTTAATGTTAGGAGTGAGACAGTGATGCCCCAATATCACTATTTAGCTTCTATCCCATTTTCCTTCCCACTAAGGAGTTTTTCAGAGCACTAGGTATTAATGATTTTCTTTCTTGATTTTCTTTTTCAG
Seq C2 exon
AGCTGTAGTGCAAGTGCTCTACAGGCAAGATTAAAAGTAGCTGCACATGAAGCTGAGGAAGAATCTGATAATATTGCAGAAGATTTCTTGGAGGGAAAAACAGATATAGATGATTTTCTCAGTAGCTTCATGGAAAAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010355:ENSBTAT00000013675:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(14.7=100)
A:
NA
C2:
PF072008=Mod_r=FE(31.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]