RnoINT0163613 @ rn6
Intron Retention
Gene
ENSRNOG00000012001 | Vps37a
Description
VPS37A, ESCRT-I subunit [Source:RGD Symbol;Acc:1560016]
Coordinates
chr16:54863597-54868049:-
Coord C1 exon
chr16:54867981-54868049
Coord A exon
chr16:54863741-54867980
Coord C2 exon
chr16:54863597-54863740
Length
4240 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTGATTTTTTTTCTGTTCAGAGT
3' ss Score
8.59
Exon sequences
Seq C1 exon
TATGAATTACTTATACAAATGAAATCTACCTTTGAAAAGAAGATGCAAAGGCAGCATGAACTCAGCGAG
Seq A exon
GTAGGACTGGCTAGTTCTTTCTGTCCCTGGGGAGCTGTCATCCTCCACAGGTGCTGGCCTTGCCTGTGCTCACTAGAAAGCTGACACCTATAAGCACACAGATCTTGTCCACGCGGAGTTTATCTAGTTCCCAATCCCAAAAGGAAGGAAAACCCCAGGGAATTTGGAAAGTAATATAACCTAGTAACAAAACCTAGTAACAAAAAGATATTTTAAATTAAGTATAATTTAAAAAATTAGACTTCTGCTTATGAAAAATAATCTTTAAAAATAAAATAAGGGGTGTAATCTTTATAGCTTACTGTGGCAAGAAACATTGTAGTTAATAATTTATTTCCCTTAAGAGACTACTTATATTTTCTTGTTAGAACAGCATAGAATATGAGTGGAATGAAAGAGTATTAATACGATTTGATTCTTCAGAATATAAATTAAAAGTTGAATATTTCCAATTAATCCCCCAAATATGTTTTTAAAAATTTAACAGATGTTAAATTGCAATTCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCTAACATGTGCTGTTGCCTGAGGTTTTGATCTTAGCCATTCTGATTGGTATAAGGCAGAATCTCACGGTCGTTTTGATTTTCATTTCCCTAATCCCTAAGGACTTTAAACATTTCTTTAAGTGCTTCTCAGCTGTTAGAGATTCCTCTGTTGTGAATTCTCCGTTTAGTTCTCTACCCCATTGTTTGATTGGGTTGTTTGGTTTTGAGAAATGAATACTATTTGGGTGTGAAAAAACTCACAAGCCTTGTCATCAATGAAATACAGTGTTTTTCAAGACCATTCACAACTTTTTTTGTTGTAGCTTCATAGTTATAGAAGGGAAGAACTGAGTAGGGTTTCCTAGCATTCTCTTAGTTTTAAAAACATTTTCATTTTGCCTTTGATTTGTAATGTGCATCTATGTATTCCTCTAATAGTCACCAAACATCCCTACATTCACTTTTACACATGTCTGCCTACTGTTCTTTTTGTTAGTATTTGAGGTTGTATTTTCATTACAGCATCCTTGCTTTGCTTGTGTCTAAACCAGTGGTTCTCACCCATGAATCGCTACCCCCACAGGGGTTGCATGTCAGATGTCCTGCATATGGGACACTTAAATTATCATTCATAGCAGTGGCAAAATTATAGTTATAAAATAGCAATGAAATCATTTTATGGTTGGGAGTCAGCACAGCATGAGGAACTGCATTAAATGGTCACAGCATTAGGAAGGTTGAAATGCACTGGGTACTCCTACATCCTCCTCTCTACTCTCCTTCAGATGCAAGGCCTTTCTTCTTAATCAGTTGTTATTGCATGAATACATGCGTTTATTTCTTATATTCATGCATAAGAATATATTACCTGAGTTCATATATATTATTTCTGTGTAGGCTTTCAGGGCTTACTGTTTGGCATTGGACAACTAATGCTGTGTTCTTCCCTGCAGAGGACCACTTACCCTACTGCTAGGTTTATTTCATTACCTATAGTTCTTTGTAGAGTATTAGTATAATTTTAAAAGTGATAATTTGTCTTTATCCCAACTAGCTACATGAGACAAATTCTAAGTTTTATTTGATAAGTTAAAAAAATATGAATGGATTAAAGCAGTCAGGAAGAATTGAACGAAAAAGGAATGAGAAAAACATGCTTCATCAATAGCAAACCAAAGTATTCTGTGAAATGTCATTTAAAATGATACAGAAGTTTTGTAGGAAGATGGAAAATAGTTGTATGGCGCAGGCTGCATTTCCAAAATAGATTCGTGTATGTGACCAATAACTAGAAAAACTTCAGGATTCACAAATTACATAATTGTTTATCAGTTTAGAATCCAATGAGAAATAGCCTTGATCCTTCATATCAAACTTCATAAAGATCCTATCATAGGGATTTGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCGAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAAAGACCCTATCATACAGAGTATAGGAAAATGCTACAGACACATAGAGTTTTAGAACAAAGTGTAAAAATCAGTTAATTGCTAGGAATATTTTAAAAAGATTTTTATGGAAAAACATTTCATAGAGAAAAATGCTCACATTCAAATATATTTAAAATTGATAAGTAATAAAAATAAAAGTGAAAGTGAATTTTTAAAGAACACATGTATAATACAGACAGTACAAGCGTTGCGAGTGGATTATAAAGAGCAAACGAGAAAGTAGCAAACTCATCTCAGAGAAAATGTCTATGTCTTCTAAAGAGCTCTGTTTCAGGGCTGAGACCTGGAACATTTACCGAGCGTACGTAAGGCCTCAGCTGCATCCCTGCTGCCAGCACAGTTGAGCTTGCACTTTTTTTCTTGCCCGTGGACATTTCTGTAAGAATTTCTTGAGGTGATTCTTGAAATACTTAAAAACTGGCCTGAGGTGGTGGCATACGCCTCTAATCCACAGACTTGGAAAGCAGAGGTAGGCTGATCTCTGAATTTGAGTCTAGCCTGGTCTACAGAGTGAGTTCCAAGATGGCCAGAGCTACAGAGGTAAACCTGTCTCAAAAAAAACAATACCAAAAACCTTCCAGAAAACCAACAGATACGTCTGTGATGCTTTATGGACTAACTTCTGACATCACGAGGAGACAAAACCTCACAGGAAACTCCCTGGTCCTCTGGCCCTTCTAATCTTCCCATGTTCCCTGGGCCTTAGCTCCAGGAGTTGTTTTGTATCTATTTGGACTGGGTTCCACAACTCTGTGTTTTGATTAGTTGTGGTTTTCTGTATTTGTCTTTCTGATATGTTACAAAGAGAAGTTTTCTTGATGAGGGGCGAGGACAGCTCATCTGCGAATTAAGATTATGCTGGATTAATAAAGTGATTGTAGGTTCTTTAGGATTCACTACTTCACTAGCCCTGTGTAGTTGGCTAGGTTCCCTGTCACAGGCATGATTTCCCCCTTTGTCAAGCAGGTTTTACATCCTACTAAAAGGTAATGGTTACTGCCAAGGTGTGCATGCTGCTACTGCACTTTGAGTTATCATGACATGCTTGTCATTACTGTAGTTCATAGGCATCATAGCTGCGTAGAACTGTGATTGCCTCTCATCTTCACAAGTTTGTGTGGTGCTTTCTCATACCATGAAAGCTAGTCTTTATGGTGGACTTAAGGCCTTGTGTCTGAAGTACATACTGTCTTCAGCAATAAGGACTTGACTGTCCACCTCTGGATGGCAACCAAGGGCAACAGCAAAAGCCTGTAGTGTTTGGGGCATCTCTTGGGCAACTCTGAGCAACAAATCAAGAGGCTTTCTCATGCCTAGTGTTTGATTTTTTTTTTTTTTTTCCGGTTAGGTAGTCTTTGGTTCTTGGAGGGAGCATTGTTAACCCAGATGGGATGTCATTTGAATGTTAGGATACTTCTTTTTTTCAATGAAAGACTCTTGGGCTGTATGAGATTGCATTGATTTTTGAAGATCCTTTGCATTATCATTGTTGTCGTAACCTAACAAAGACAAGAACAGGAATACAAGGAGATGGGGATCATTGGGTCATCTGAGTAGGTATTGTCACAGTGATGTAACTCCAAACTGTCTAGAACAGTGGTCTTTCAGTTTCTCATTTATATATTTTTATACTTTTACAATTTGTGATTTGTGTTTGATATCTGTACTTGCTAATTGTAGGTCAAATTGACACAAGCTATAGTTATCAGAGAGGAAGGAGCCCCAATTAAGAAAATACCTCCATAAGATTGGGCTGTGTATGAGTCTGTAGTACATTTTCTTAATCAGGTATTGATAGGGTAGAGCCCATCCCATTGTGGGTGGTACAGTCCTTGAGCTCTATAAGAAAGCAGGCTAAGCAAGCCATGAGAAACAGACCAAAAGCAGCACTCCTCCATGTCCTCTGCATCAGCTCCTGCCTCCAGGTTCCTACCCAGTTTGAGTTCCTGTCCTAACCTTCTTCAGTGATGAATGGTGATGTGGAACTGTAAGCCAAACAAATCCTTCATCCCCAGTTTGCTTTCTGTCCTGGTGTTTCATTACAGTAAGAGAAGAAACCCTAGCTAAGGCAGAATCTATCCAAGCAGCCAATGCTGAAGACCCATGTGAAGATTGCTTTTCATTTCCCCCCTACAGTGCATCTGATATTATAGACTAATGCATTGCCTGATTTTTTTTCTGTTCAG
Seq C2 exon
AGTTGTAGTGCAAGTGCCCTACAGGCAAGATTGAAAGTAGCCGCACATGAGGCTGAGGAGGAGTCTGATAATATTGCCGAAGATTTCCTGGAGGGAAAAACTGAAATAGATGATTTTCTCAATAGCTTCAAGGAAAAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012001:ENSRNOT00000016321:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(14.7=100)
A:
NA
C2:
PF072008=Mod_r=FE(31.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]