BtaINT0160812 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40502276-40502582:-
Coord C1 exon
chr29:40502488-40502582
Coord A exon
chr29:40502366-40502487
Coord C2 exon
chr29:40502276-40502365
Length
122 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
ACCTGTGTTTCTCCTCTCAGCCC
3' ss Score
10.18
Exon sequences
Seq C1 exon
ACGCCGGCTGGGCCCCCACGTCTGCCTCTCGGGATTCGGGAGCGGCTGCTGCCCTGGCTGGGCGCCCTCCATGGGCAGTGGGCACTGCACCCTTC
Seq A exon
GTAAGTGCCTGTCCCTGTGCCCCAAATGTCCTCCACAGCAGGGTGCGCCTTCCCTGGGCTGGCCTGAGGGGCAGACTGGGGGGCTCCAGCCCCGACTCCCTCACCTGTGTTTCTCCTCTCAG
Seq C2 exon
CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGACGGAGAGCAAGGGCCCACCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568:ENSBTAT00000028738:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTGCCTCTCGGGATTC
R:
AGGTGGGCCCTTGCTCTC
Band lengths:
162-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]