MmuINT0174460 @ mm10
Intron Retention
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10637144-10637406:+
Coord C1 exon
chr19:10637144-10637238
Coord A exon
chr19:10637239-10637316
Coord C2 exon
chr19:10637317-10637406
Length
78 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
ACCTCCATCTTTCCTCTCAGCCC
3' ss Score
9.06
Exon sequences
Seq C1 exon
ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC
Seq A exon
GTAAGTACCCATCCATCCTTGTGACCCAAGCCTGTGCATTGCCAGGGCCTGCTCCCTCACCTCCATCTTTCCTCTCAG
Seq C2 exon
CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789:ENSMUST00000055115:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACGTCTGCCTCTCTG
R:
CAAGTGGCCCCTTGCTCTC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types