BtaINT0160819 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40494538-40495153:-
Coord C1 exon
chr29:40494714-40495153
Coord A exon
chr29:40494632-40494713
Coord C2 exon
chr29:40494538-40494631
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ACTTCCGTTTCTGCTTCTAGGAT
3' ss Score
11.63
Exon sequences
Seq C1 exon
CTTTCCCCAAAGCTGTGCTGGCCCCATCTGCCATCCTGCAGCCTCTGCAGCACCCTCCTAAGATGCTCCTGCTGCTTCCAGAGGCAGGCCGGCCCGCCCTCTCCCCCGGGCACAGCCCTCCTTCCGGGGCTCCGGGGCCCCCGACTGGAGTCAGGAGCACACGACCACCACCTCCCATGCCTGCACTGTCCACGTCCTCCCCTTCTGCCCCGACGCCGCTGCTGTCCACCCCGGTGGCCACCCCCGTGCCGCATCCCTCTCTGCTGGGAACCCTCAGACCTCCCGCACAACTCCAGAAGACGGCGGTGACTCCTCCCTTGCCCAGGGGCCCCGAGACCACACGGCTGGCACCAGGACCCTCTGCCTGTTGGCACCTAGAGGCCACGTATGAGTCAGGGAGCCGCTGGACAGAGCCTGGCTGTTCCCAGTGCTGGTGTGAG
Seq A exon
GTGGGTGTGAGGGGTCCTTGGGGTTTCCCTGGTCTGGTGTCTGGGGCCTTGTGGTGGCTGGAACTTCCGTTTCTGCTTCTAG
Seq C2 exon
GATGGGGAGGTGACCTGTGAAAAGGTGACGTGTGAAGCTGCTTGCTCCCACCCGATTCCCTCCAGAGATGGAGGGTGCTGCCCATCGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568:ENSBTAT00000028738:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(43.6=16.3)
A:
NA
C2:
PF0009313=VWC=PD(52.7=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCGCACAACTCCAGAAGA
R:
TTTCACAGGTCACCTCCCCAT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]