MmuINT0174466 @ mm9
Intron Retention
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10721024-10721615:+
Coord C1 exon
chr19:10721024-10721442
Coord A exon
chr19:10721443-10721521
Coord C2 exon
chr19:10721522-10721615
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ACTCCTGTTTGTGCATTCAGGAT
3' ss Score
9.13
Exon sequences
Seq C1 exon
CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG
Seq A exon
GTAGGTGTGAAGTCCCCAGGCTGCCTTGGGGGAGTGTCTAGGTTCTGCCCACCACTGCAACTCCTGTTTGTGCATTCAG
Seq C2 exon
GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-Vwce:NM_027913:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(43.6=17.1)
A:
NA
C2:
PF0009313=VWC=PD(52.7=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCACCTAGGGGTCCTG
R:
AGCGTCACACCTTACTCCTCC
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: