BtaINT0163467 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36380395-36380964:-
Coord C1 exon
chr25:36380870-36380964
Coord A exon
chr25:36380572-36380869
Coord C2 exon
chr25:36380395-36380571
Length
298 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TACCTCGTTTCATCCACCAGGAC
3' ss Score
8.38
Exon sequences
Seq C1 exon
CTGCTTTGCTGCAGATGCCAGGCCCCCCAGGTGCCTGGAAAAGAATGCAACTGACCCCTGGAGTAAGAACTGTGATATCTTAGTGAATCCTCAGG
Seq A exon
GTAAGCCACACAGGGGCCCCTGTTTGCTCCCCCCCACCCCCCAGGACAGGAGACAGAGGAGGGGGGCTGATCATTGAGGGAGGGAGGTGAGACAGGAAGTTGAGACAGCCGAGGGGATGCGGAGGCAGTGGTCACCTGGGGGCTCTGATGGATCTGTGGGGTTTTTTTGCATCTCAGGCAGTAGGTTCTTAACAATCACGGGTTTGGATGGAAGTGGATGTTGACTTTGCCCCAGAGCAGGCTTGTGGTTCCGCTTCCTCCCGAGGCTCACTCTCACCTACCTCGTTTCATCCACCAG
Seq C2 exon
GACCCTTCTCCACATGCCACAGGGTGGTGTCCCCGCAGGCCAGCTTCGCCAGCTGTGTGTACGGCCAGTGTGGGACCAAGGGCGATGCCTTCACCCTGTGCCGCTCCCTGCAGGCCTACGCGTCCCTGTGTGCCCGTGCCGGCCAGGTCCTCACCTGGCGGAGCAGCACCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(20.0=45.5)
A:
NA
C2:
PF087426=C8=FE(78.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGCTGCAGATGCCAG
R:
CAGAAGGTGCTGCTCCGC
Band lengths:
269-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]