HsaINT0184450 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100367503-100369643:+
Coord C1 exon
chr7:100367503-100367597
Coord A exon
chr7:100367598-100369466
Coord C2 exon
chr7:100369467-100369643
Length
1869 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGCCTTCTCTCTTCCTGCAGGAC
3' ss Score
13.93
Exon sequences
Seq C1 exon
CTGTTTCCTTGTGGGTGGCAAGCCCTCCAGCTGCCAGGAGAACAGCATGGCAGACGCCTGGAACAAGAACTGTGCGATCTTAATAAACCCTCAGG
Seq A exon
GTAAGACATGTCCCTGCTGGCCCTTTTTCCTCCCTGAAGGACAGGAGGCTGGGGAGGGAGTCTAGTCAGGGAGGGAGAAACAACAAGACCAGAAACAGATGGAAAAGCATGAGGAAGGCAAATGGGAACACAGGGCCAGCCAGCAGTCACCTTCTTGGGACCTATGACTGATGGGTCTGTATTTGTGTCTCAGGCAGTAGATAAATCCGGGATTTCTTTTTTTTTTTCCTATTAAAAATGTTTTAATAGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCCGAGGAGGGCAGATCCCGAGGTCAGGAGTTCGAGACCAGCCTGGCTAGCATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCCTGGTGACGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCGCTTTAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTTCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGTTTAATAGAGATGGGGGAGTCTCACTATGTAGCCCAGGCTGTTCTCGAACTATGGACCCCAAGGGATCCTCCCCCTTGGCCTCCCAAGTAGTTGGGATGACAGGCATAAGCCACCACGCCTGGCCGTTTTTTCTTTTTTCTTGTTTTTTAGAGACAAGGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCACAGCTCACTGCAGGCTTGAACTCCTGGGCTCAAGTAATCCTCCCGCCTCAGCCTTCAGAGTAGCTGGGACCACAGGCATGCACCACCATGCCCAACTAATTTTTTTTTTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGTGTGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGCGCAAGCTATTTTCCCACCTCAGCTTCCCAAGTAGCTGGGATTACAGGCCTGTGCCACCACACCCGGCTAGTTTTTGTATCTTTAGTAGAGACAACATTTCACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAAATGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGTATTAAAGGCATGAGCCATCATGCCTGGCCTAATTTTTAAATATTTTCTGGAGATGAGGTCTTGCTATGCAGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATTCTCCTGCTTTGCCCTCCTAAAGTGCTGAGGTTATAGGCGGGAGCCACCACACAAATCTGGGTTTTGTTTGTTTGTTTTGTTTATATTCTCTGTTACCCAGGTTGGAGTGCAATGGCACAATCATAGCTCATCCTCCTGCCTCAGCCTGCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGGCCGGCTAATTTTTGTACAGACACAGTTTCACTGTATTGCTCAGGCTGGAAAATCCAGGAGGTTTTTTTTTTGTTTTTTTTTTTTGAGACGGAGTCTTGATCTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTCAGCTCACTGCCACCTTTGCCTCCTGGGTTCAAGAGATTCTCCTGCCCCAACCTCCCGAGTTGCCTGGACTACAGGTGCCCTCTACTATGCCCTGCTAATTTTTGTATTTTTAGTAGAGATTGGGTTTCACCATGATGGTCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCGGGAAAATCCAGGTTTTGACTGAAGTGGATGTCGAATCAGCCCCAGGGAAGCCACATGGCCCTGTTCCTTCCCGGCCCCTCCCCTGGCTCATCTGCCTTCTCTCTTCCTGCAG
Seq C2 exon
GACCCTTCTCTCAATGTCACCAGGTGGTGCCTCCCCAGTCCAGCTTTGCCAGTTGCGTGCATGGTCAGTGTGGGACCAAGGGCGACACCACAGCCCTGTGCCGCTCCCTGCAGGCCTACGCGTCCCTGTGTGCCCAGGCTGGCCAGGCCCCTGCCTGGCGGAACAGAACCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(20.0=45.5)
A:
NA
C2:
PF087426=C8=FE(78.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCTTGTGGGTGGCAAG
R:
GAAGGTTCTGTTCCGCCAGG
Band lengths:
267-2136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)